CXCR5 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of CXCR5 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
spleen	100%	222.59	241 / 241	0%	0	0 / 0
peripheral blood	95%	54.73	885 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	90%	8.02	26 / 29
blood vessel	62%	4.47	827 / 1335	0%	0	0 / 0
intestine	52%	31.69	500 / 966	2%	0.11	10 / 527
lung	50%	3.28	291 / 578	2%	0.06	28 / 1155
bladder	43%	2.81	9 / 21	1%	0.03	4 / 504
adipose	33%	2.04	401 / 1204	0%	0	0 / 0
prostate	33%	2.00	80 / 245	1%	0.01	3 / 502
breast	29%	1.63	135 / 459	2%	0.05	19 / 1118
stomach	25%	1.71	91 / 359	4%	0.15	11 / 286
esophagus	27%	1.76	394 / 1445	1%	0.02	1 / 183
thymus	23%	4.06	149 / 653	2%	0.04	14 / 605
skin	18%	0.82	331 / 1809	6%	0.15	27 / 472
muscle	20%	1.02	164 / 803	0%	0	0 / 0
uterus	20%	0.92	34 / 170	0%	0.00	1 / 459
pancreas	15%	0.58	50 / 328	4%	0.13	8 / 178
ovary	18%	0.87	32 / 180	0%	0	0 / 430
kidney	16%	2.30	14 / 89	0%	0.00	1 / 901
liver	11%	0.45	24 / 226	0%	0.01	2 / 406
tonsil	0%	0	0 / 0	11%	0.15	5 / 45
heart	10%	0.51	84 / 861	0%	0	0 / 0
adrenal gland	9%	0.39	23 / 258	0%	0	0 / 230
brain	4%	0.18	118 / 2642	0%	0.01	2 / 705
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0006955	Biological process	immune response
GO_0007186	Biological process	G protein-coupled receptor signaling pathway
GO_0070098	Biological process	chemokine-mediated signaling pathway
GO_0007204	Biological process	positive regulation of cytosolic calcium ion concentration
GO_0030595	Biological process	leukocyte chemotaxis
GO_0019722	Biological process	calcium-mediated signaling
GO_0042113	Biological process	B cell activation
GO_0032467	Biological process	positive regulation of cytokinesis
GO_0060326	Biological process	cell chemotaxis
GO_0048535	Biological process	lymph node development
GO_0009897	Cellular component	external side of plasma membrane
GO_0005886	Cellular component	plasma membrane
GO_0016493	Molecular function	C-C chemokine receptor activity
GO_0019957	Molecular function	C-C chemokine binding
GO_0016494	Molecular function	C-X-C chemokine receptor activity
GO_0004930	Molecular function	G protein-coupled receptor activity
GO_0005515	Molecular function	protein binding

Gene name	CXCR5
Protein name	Chemokine (C-X-C motif) receptor 5 C-X-C chemokine receptor type 5 (CXC-R5) (CXCR-5) (Burkitt lymphoma receptor 1) (Monocyte-derived receptor 15) (MDR-15) (CD antigen CD185)
Synonyms	MDR15 BLR1
Description	FUNCTION: Cytokine receptor that binds to B-lymphocyte chemoattractant (BLC). Involved in B-cell migration into B-cell follicles of spleen and Peyer patches but not into those of mesenteric or peripheral lymph nodes. May have a regulatory function in Burkitt lymphoma (BL) lymphomagenesis and/or B-cell differentiation.
Accessions	Q2YD84 ENST00000292174.5 [P32302-1] P32302

CXCR5 report