CWC25 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	9 studies	20% ± 4%	Explore
classical monocyte	7 studies	25% ± 8%	Explore
naive B cell	6 studies	17% ± 2%	Explore
natural killer cell	5 studies	20% ± 4%	Explore
non-classical monocyte	4 studies	27% ± 7%	Explore
CD4-positive, alpha-beta T cell	4 studies	21% ± 6%	Explore
CD8-positive, alpha-beta T cell	4 studies	21% ± 6%	Explore
plasmacytoid dendritic cell	4 studies	19% ± 3%	Explore
fibroblast	4 studies	18% ± 2%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	20% ± 3%	Explore
endothelial cell of vascular tree	4 studies	17% ± 1%	Explore
T cell	3 studies	17% ± 1%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	17% ± 3%	Explore
B cell	3 studies	25% ± 5%	Explore
CD16-negative, CD56-bright natural killer cell, human	3 studies	21% ± 2%	Explore
CD16-positive, CD56-dim natural killer cell, human	3 studies	22% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	26% ± 7%	Explore
mature NK T cell	3 studies	17% ± 1%	Explore
memory B cell	3 studies	18% ± 0%	Explore
myeloid cell	3 studies	23% ± 6%	Explore
epithelial cell	3 studies	44% ± 20%	Explore
ciliated cell	3 studies	29% ± 15%	Explore
gamma-delta T cell	3 studies	29% ± 9%	Explore
regulatory T cell	3 studies	19% ± 2%	Explore
vein endothelial cell	3 studies	17% ± 1%	Explore
mast cell	3 studies	20% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	4 studies	26% ± 7%	Explore
lung	3 studies	20% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	2292.90	21 / 21	100%	22.54	504 / 504
esophagus	100%	2268.25	1445 / 1445	100%	21.85	183 / 183
intestine	100%	2389.25	966 / 966	100%	19.69	527 / 527
lung	100%	2627.40	578 / 578	100%	22.24	1155 / 1155
prostate	100%	2639.26	245 / 245	100%	17.25	502 / 502
stomach	100%	1810.58	359 / 359	100%	18.99	286 / 286
thymus	100%	2482.38	653 / 653	100%	23.38	605 / 605
uterus	100%	2403.17	170 / 170	100%	25.11	459 / 459
ovary	100%	2247.56	180 / 180	100%	13.12	429 / 430
breast	100%	2496.10	459 / 459	100%	26.32	1114 / 1118
skin	100%	2684.92	1809 / 1809	100%	19.85	470 / 472
pancreas	100%	1379.54	328 / 328	99%	21.28	177 / 178
kidney	100%	1959.35	89 / 89	99%	24.80	895 / 901
liver	100%	1606.74	226 / 226	99%	12.61	401 / 406
brain	98%	1071.16	2586 / 2642	100%	21.02	705 / 705
adrenal gland	100%	2246.55	258 / 258	97%	12.19	224 / 230
adipose	100%	2421.34	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1913.29	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	28.39	29 / 29
spleen	100%	3329.81	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	22.60	45 / 45
ureter	0%	0	0 / 0	100%	8.39	1 / 1
muscle	100%	1447.26	801 / 803	0%	0	0 / 0
heart	99%	1043.50	853 / 861	0%	0	0 / 0
peripheral blood	98%	2090.58	914 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	95%	13.43	76 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0