Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 9 studies | 23% ± 7% | |
mesothelial cell | 4 studies | 33% ± 19% | |
retinal rod cell | 3 studies | 20% ± 4% |
Insufficient scRNA-seq data for expression of CRB2 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 1172.82 | 2624 / 2642 | 97% | 23.03 | 686 / 705 |
ovary | 18% | 58.18 | 33 / 180 | 96% | 18.15 | 412 / 430 |
kidney | 90% | 1327.01 | 80 / 89 | 24% | 1.33 | 216 / 901 |
intestine | 31% | 57.26 | 299 / 966 | 62% | 2.58 | 329 / 527 |
uterus | 78% | 421.52 | 133 / 170 | 13% | 0.75 | 58 / 459 |
spleen | 62% | 98.10 | 149 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 1.14 | 15 / 29 |
stomach | 1% | 2.03 | 2 / 359 | 45% | 1.56 | 128 / 286 |
tonsil | 0% | 0 | 0 / 0 | 40% | 4.39 | 18 / 45 |
bladder | 14% | 32.62 | 3 / 21 | 21% | 0.79 | 108 / 504 |
adipose | 30% | 203.75 | 357 / 1204 | 0% | 0 | 0 / 0 |
breast | 12% | 21.85 | 56 / 459 | 10% | 0.17 | 110 / 1118 |
thymus | 5% | 8.87 | 33 / 653 | 11% | 0.35 | 68 / 605 |
esophagus | 0% | 0.34 | 4 / 1445 | 10% | 0.24 | 18 / 183 |
lung | 4% | 15.73 | 23 / 578 | 6% | 0.34 | 68 / 1155 |
skin | 1% | 1.56 | 19 / 1809 | 4% | 0.08 | 19 / 472 |
eye | 0% | 0 | 0 / 0 | 5% | 0.31 | 4 / 80 |
heart | 5% | 14.98 | 42 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 5% | 6.84 | 44 / 929 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 3% | 0.06 | 6 / 178 |
liver | 0% | 0 | 0 / 226 | 2% | 0.05 | 10 / 406 |
blood vessel | 1% | 3.28 | 19 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 1.56 | 1 / 258 | 0% | 0.01 | 1 / 230 |
prostate | 0% | 0 | 0 / 245 | 0% | 0.01 | 2 / 502 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030010 | Biological process | establishment of cell polarity |
GO_0007601 | Biological process | visual perception |
GO_0001895 | Biological process | retina homeostasis |
GO_0045199 | Biological process | maintenance of epithelial cell apical/basal polarity |
GO_0010951 | Biological process | negative regulation of endopeptidase activity |
GO_0045494 | Biological process | photoreceptor cell maintenance |
GO_0010470 | Biological process | regulation of gastrulation |
GO_0072359 | Biological process | circulatory system development |
GO_0055111 | Biological process | ingression involved in gastrulation with mouth forming second |
GO_0046549 | Biological process | retinal cone cell development |
GO_0001707 | Biological process | mesoderm formation |
GO_0014028 | Biological process | notochord formation |
GO_0030513 | Biological process | positive regulation of BMP signaling pathway |
GO_0001756 | Biological process | somitogenesis |
GO_0010718 | Biological process | positive regulation of epithelial to mesenchymal transition |
GO_0007157 | Biological process | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules |
GO_0045197 | Biological process | establishment or maintenance of epithelial cell apical/basal polarity |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0035003 | Cellular component | subapical complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0032991 | Cellular component | protein-containing complex |
GO_0043296 | Cellular component | apical junction complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0016327 | Cellular component | apicolateral plasma membrane |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0019828 | Molecular function | aspartic-type endopeptidase inhibitor activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CRB2 |
Protein name | Protein crumbs homolog 2 (Crumbs-like protein 2) |
Synonyms | |
Description | FUNCTION: Apical polarity protein that plays a central role during the epithelial-to-mesenchymal transition (EMT) at gastrulation, when newly specified mesodermal cells move inside the embryo (By similarity). Acts by promoting cell ingression, the process by which cells leave the epithelial epiblast and move inside the embryo to form a new tissue layer (By similarity). The anisotropic distribution of CRB2 and MYH10/myosin-IIB at cell edges define which cells will ingress: cells with high apical CRB2 are probably extruded from the epiblast by neighboring cells with high levels of apical MYH10/myosin-IIB (By similarity). Plays a role in the maintenance of retinal neuroepithelium organization, structural integrity, adhesion, photoreceptor polarity and retinal photoreceptor layer thickness (By similarity). May play a role in determining the length of cone photoreceptor outer segments and proliferation of late-born progenitor cells (By similarity). Also required for maintenance of the apical polarity complex during development of the cortex (By similarity). Inhibits gamma-secretase-dependent cleavage of APP and secretion of amyloid-beta peptide 40 and amyloid-beta peptide 42, and thereby inhibits gamma-secretase-dependent Notch transcription . . |
Accessions | Q5IJ48 ENST00000359999.7 [Q5IJ48-2] ENST00000373631.8 [Q5IJ48-1] ENST00000460253.1 [Q5IJ48-3] |