Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 48 studies | 75% ± 18% | |
pericyte | 39 studies | 59% ± 20% | |
smooth muscle cell | 33 studies | 58% ± 18% | |
endothelial cell | 21 studies | 36% ± 17% | |
connective tissue cell | 19 studies | 70% ± 26% | |
endothelial cell of lymphatic vessel | 16 studies | 31% ± 11% | |
myofibroblast cell | 15 studies | 71% ± 15% | |
mesothelial cell | 12 studies | 50% ± 18% | |
capillary endothelial cell | 6 studies | 35% ± 17% | |
endothelial cell of artery | 5 studies | 44% ± 25% | |
vein endothelial cell | 5 studies | 43% ± 24% | |
adventitial cell | 5 studies | 76% ± 21% | |
adipocyte | 4 studies | 56% ± 37% | |
progenitor cell | 3 studies | 42% ± 22% | |
interstitial cell of Cajal | 3 studies | 74% ± 17% | |
glial cell | 3 studies | 24% ± 7% | |
lymphocyte | 3 studies | 27% ± 8% | |
basal cell | 3 studies | 24% ± 2% | |
myoepithelial cell | 3 studies | 43% ± 24% | |
muscle cell | 3 studies | 58% ± 8% | |
chondrocyte | 3 studies | 48% ± 24% | |
Schwann cell | 3 studies | 30% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 99% | 77706.88 | 455 / 459 | 96% | 619.69 | 1074 / 1118 |
prostate | 99% | 99737.37 | 243 / 245 | 93% | 243.41 | 469 / 502 |
lung | 99% | 65125.38 | 573 / 578 | 89% | 324.47 | 1025 / 1155 |
skin | 94% | 116386.71 | 1703 / 1809 | 89% | 435.51 | 419 / 472 |
intestine | 95% | 138473.63 | 916 / 966 | 84% | 277.38 | 445 / 527 |
ovary | 100% | 115186.47 | 180 / 180 | 79% | 284.35 | 338 / 430 |
bladder | 100% | 151988.19 | 21 / 21 | 76% | 336.54 | 381 / 504 |
uterus | 99% | 163276.38 | 169 / 170 | 74% | 452.76 | 340 / 459 |
esophagus | 84% | 113245.85 | 1216 / 1445 | 85% | 373.61 | 156 / 183 |
thymus | 86% | 33961.66 | 563 / 653 | 71% | 215.09 | 431 / 605 |
stomach | 61% | 60681.87 | 220 / 359 | 87% | 334.22 | 249 / 286 |
adipose | 100% | 110664.15 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 345.13 | 29 / 29 |
blood vessel | 100% | 167511.09 | 1333 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 4% | 1237.10 | 14 / 328 | 93% | 558.49 | 165 / 178 |
kidney | 21% | 6917.18 | 19 / 89 | 70% | 226.14 | 635 / 901 |
eye | 0% | 0 | 0 / 0 | 88% | 149.58 | 70 / 80 |
heart | 86% | 42778.38 | 742 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 28% | 6969.46 | 73 / 258 | 52% | 117.65 | 119 / 230 |
spleen | 79% | 26079.45 | 190 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 78% | 335.10 | 35 / 45 |
liver | 6% | 2007.28 | 14 / 226 | 36% | 75.00 | 148 / 406 |
brain | 0% | 15.76 | 2 / 2642 | 20% | 82.53 | 143 / 705 |
muscle | 14% | 4173.90 | 115 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 43.99 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051402 | Biological process | neuron apoptotic process |
GO_0009411 | Biological process | response to UV |
GO_0007155 | Biological process | cell adhesion |
GO_0009749 | Biological process | response to glucose |
GO_0043491 | Biological process | phosphatidylinositol 3-kinase/protein kinase B signal transduction |
GO_0005615 | Cellular component | extracellular space |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0042383 | Cellular component | sarcolemma |
GO_0032991 | Cellular component | protein-containing complex |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0005581 | Cellular component | collagen trimer |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0030020 | Molecular function | extracellular matrix structural constituent conferring tensile strength |
GO_0005518 | Molecular function | collagen binding |
GO_0005515 | Molecular function | protein binding |
Gene name | COL6A2 |
Protein name | Collagen alpha-2(VI) chain Collagen type VI alpha 2 chain COL6A2 protein |
Synonyms | |
Description | FUNCTION: Collagen VI acts as a cell-binding protein. |
Accessions | Q6FHW5 ENST00000436769.5 H7C0M5 ENST00000300527.9 [P12110-1] ENST00000397763.6 [P12110-2] C9JH44 ENST00000409416.6 [P12110-3] ENST00000413758.1 P12110 |