Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 36% ± 14% | |
astrocyte | 15 studies | 40% ± 22% | |
macrophage | 12 studies | 42% ± 19% | |
microglial cell | 12 studies | 46% ± 15% | |
oligodendrocyte precursor cell | 10 studies | 36% ± 20% | |
oligodendrocyte | 10 studies | 41% ± 17% | |
fibroblast | 10 studies | 37% ± 13% | |
glutamatergic neuron | 9 studies | 45% ± 23% | |
adipocyte | 9 studies | 38% ± 10% | |
mast cell | 9 studies | 27% ± 10% | |
GABAergic neuron | 8 studies | 45% ± 23% | |
epithelial cell | 7 studies | 37% ± 18% | |
pericyte | 7 studies | 29% ± 10% | |
endothelial cell of lymphatic vessel | 7 studies | 39% ± 11% | |
neuron | 6 studies | 42% ± 23% | |
goblet cell | 6 studies | 31% ± 29% | |
dendritic cell | 6 studies | 33% ± 8% | |
T cell | 6 studies | 32% ± 8% | |
myeloid cell | 6 studies | 36% ± 13% | |
smooth muscle cell | 6 studies | 31% ± 7% | |
interneuron | 5 studies | 61% ± 28% | |
B cell | 5 studies | 30% ± 9% | |
cardiac muscle cell | 5 studies | 56% ± 13% | |
ciliated cell | 5 studies | 25% ± 9% | |
monocyte | 5 studies | 41% ± 10% | |
type I pneumocyte | 5 studies | 37% ± 9% | |
type II pneumocyte | 5 studies | 35% ± 8% | |
granule cell | 4 studies | 31% ± 8% | |
plasma cell | 4 studies | 35% ± 12% | |
mesothelial cell | 4 studies | 29% ± 7% | |
amacrine cell | 4 studies | 27% ± 7% | |
retina horizontal cell | 4 studies | 24% ± 8% | |
retinal cone cell | 4 studies | 38% ± 15% | |
retinal rod cell | 4 studies | 32% ± 6% | |
club cell | 4 studies | 38% ± 11% | |
natural killer cell | 4 studies | 31% ± 7% | |
CD4-positive, alpha-beta T cell | 3 studies | 30% ± 2% | |
CD8-positive, alpha-beta T cell | 3 studies | 26% ± 4% | |
vein endothelial cell | 3 studies | 35% ± 21% | |
GABAergic amacrine cell | 3 studies | 36% ± 12% | |
Mueller cell | 3 studies | 29% ± 9% | |
glycinergic amacrine cell | 3 studies | 22% ± 3% | |
retinal ganglion cell | 3 studies | 25% ± 12% | |
endothelial cell of vascular tree | 3 studies | 38% ± 20% | |
hepatocyte | 3 studies | 41% ± 16% | |
retinal pigment epithelial cell | 3 studies | 36% ± 22% | |
abnormal cell | 3 studies | 33% ± 16% | |
alveolar macrophage | 3 studies | 54% ± 10% | |
capillary endothelial cell | 3 studies | 25% ± 4% | |
respiratory goblet cell | 3 studies | 48% ± 16% | |
lymphocyte | 3 studies | 46% ± 14% | |
basal cell | 3 studies | 45% ± 19% | |
transit amplifying cell | 3 studies | 37% ± 30% | |
mucus secreting cell | 3 studies | 42% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1780.77 | 1445 / 1445 | 100% | 20.04 | 183 / 183 |
lung | 100% | 1952.57 | 577 / 578 | 100% | 17.18 | 1155 / 1155 |
prostate | 100% | 2534.76 | 245 / 245 | 100% | 29.14 | 501 / 502 |
ovary | 100% | 2080.02 | 180 / 180 | 100% | 13.95 | 429 / 430 |
stomach | 100% | 1480.31 | 359 / 359 | 100% | 18.44 | 285 / 286 |
breast | 100% | 2137.64 | 459 / 459 | 100% | 20.84 | 1114 / 1118 |
intestine | 100% | 1914.38 | 966 / 966 | 100% | 18.14 | 525 / 527 |
pancreas | 100% | 1549.23 | 328 / 328 | 99% | 12.61 | 176 / 178 |
brain | 99% | 1178.21 | 2613 / 2642 | 100% | 16.50 | 704 / 705 |
thymus | 100% | 2499.36 | 653 / 653 | 98% | 14.27 | 595 / 605 |
skin | 100% | 2376.64 | 1809 / 1809 | 98% | 21.25 | 464 / 472 |
uterus | 100% | 3096.61 | 170 / 170 | 98% | 11.80 | 451 / 459 |
bladder | 100% | 1892.14 | 21 / 21 | 98% | 14.34 | 495 / 504 |
kidney | 100% | 1267.94 | 89 / 89 | 97% | 12.87 | 874 / 901 |
adrenal gland | 100% | 1591.55 | 258 / 258 | 95% | 18.48 | 218 / 230 |
liver | 95% | 614.31 | 215 / 226 | 76% | 5.72 | 308 / 406 |
adipose | 100% | 2055.97 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2293.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1387.14 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1436.28 | 241 / 241 | 0% | 0 | 0 / 0 |
heart | 98% | 2442.33 | 843 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 13.00 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 93% | 8.88 | 27 / 29 |
peripheral blood | 92% | 1097.97 | 856 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 9.28 | 73 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0007030 | Biological process | Golgi organization |
GO_0000301 | Biological process | retrograde transport, vesicle recycling within Golgi |
GO_0006891 | Biological process | intra-Golgi vesicle-mediated transport |
GO_0070085 | Biological process | glycosylation |
GO_0048219 | Biological process | inter-Golgi cisterna vesicle-mediated transport |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0017119 | Cellular component | Golgi transport complex |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | COG5 |
Protein name | Conserved oligomeric Golgi complex subunit 5 (COG complex subunit 5) (13S Golgi transport complex 90 kDa subunit) (GTC-90) (Component of oligomeric Golgi complex 5) (Golgi transport complex 1) Component of oligomeric golgi complex 5 |
Synonyms | GOLTC1 GTC90 |
Description | FUNCTION: Required for normal Golgi function. . |
Accessions | ENST00000605888.1 Q9UP83 U3KQU7 ENST00000297135.9 [Q9UP83-4] |