Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 14 studies | 24% ± 8% | |
| plasma cell | 13 studies | 28% ± 11% | |
| plasmablast | 9 studies | 34% ± 22% | |
| epithelial cell | 7 studies | 41% ± 18% | |
| basal cell | 7 studies | 29% ± 14% | |
| astrocyte | 7 studies | 27% ± 8% | |
| B cell | 5 studies | 24% ± 4% | |
| pericyte | 5 studies | 19% ± 4% | |
| fibroblast | 5 studies | 23% ± 8% | |
| type I pneumocyte | 5 studies | 21% ± 6% | |
| GABAergic neuron | 5 studies | 41% ± 19% | |
| oligodendrocyte | 5 studies | 22% ± 3% | |
| oligodendrocyte precursor cell | 5 studies | 30% ± 10% | |
| ciliated cell | 4 studies | 30% ± 8% | |
| luminal hormone-sensing cell of mammary gland | 4 studies | 21% ± 6% | |
| adipocyte | 4 studies | 24% ± 7% | |
| macrophage | 4 studies | 19% ± 4% | |
| type II pneumocyte | 4 studies | 25% ± 11% | |
| glutamatergic neuron | 4 studies | 57% ± 19% | |
| interneuron | 4 studies | 40% ± 23% | |
| plasmacytoid dendritic cell | 4 studies | 24% ± 5% | |
| pancreatic A cell | 3 studies | 33% ± 5% | |
| type B pancreatic cell | 3 studies | 45% ± 3% | |
| CD4-positive, alpha-beta T cell | 3 studies | 25% ± 0% | |
| non-classical monocyte | 3 studies | 21% ± 5% | |
| IgG plasma cell | 3 studies | 17% ± 1% | |
| myofibroblast cell | 3 studies | 19% ± 4% | |
| mucus secreting cell | 3 studies | 25% ± 4% | |
| cardiac muscle cell | 3 studies | 18% ± 2% | |
| natural killer cell | 3 studies | 20% ± 2% | |
| pancreatic ductal cell | 3 studies | 49% ± 15% | |
| intestinal crypt stem cell | 3 studies | 20% ± 4% | |
| endothelial cell of lymphatic vessel | 3 studies | 21% ± 1% | |
| goblet cell | 3 studies | 33% ± 18% | |
| transit amplifying cell | 3 studies | 25% ± 13% | |
| neuron | 3 studies | 31% ± 3% | |
| luminal cell of prostate epithelium | 3 studies | 20% ± 6% | |
| secretory cell | 3 studies | 28% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 2073.26 | 1445 / 1445 | 100% | 29.63 | 183 / 183 |
| pancreas | 100% | 2514.88 | 328 / 328 | 100% | 22.06 | 178 / 178 |
| prostate | 100% | 2494.02 | 245 / 245 | 100% | 33.37 | 502 / 502 |
| breast | 100% | 2164.66 | 459 / 459 | 100% | 33.35 | 1117 / 1118 |
| lung | 100% | 2019.16 | 577 / 578 | 100% | 31.45 | 1155 / 1155 |
| uterus | 100% | 1684.77 | 170 / 170 | 100% | 27.57 | 458 / 459 |
| liver | 100% | 2822.20 | 226 / 226 | 100% | 21.20 | 405 / 406 |
| stomach | 100% | 2121.21 | 359 / 359 | 100% | 27.41 | 285 / 286 |
| bladder | 100% | 1632.57 | 21 / 21 | 100% | 26.65 | 502 / 504 |
| thymus | 100% | 2694.83 | 653 / 653 | 99% | 27.66 | 601 / 605 |
| brain | 99% | 1615.94 | 2627 / 2642 | 100% | 16.05 | 703 / 705 |
| ovary | 100% | 1569.72 | 180 / 180 | 99% | 23.10 | 426 / 430 |
| kidney | 100% | 2738.13 | 89 / 89 | 99% | 20.37 | 890 / 901 |
| intestine | 100% | 1860.86 | 966 / 966 | 99% | 28.67 | 520 / 527 |
| adrenal gland | 100% | 2493.27 | 258 / 258 | 97% | 18.13 | 223 / 230 |
| skin | 100% | 2181.31 | 1808 / 1809 | 88% | 15.38 | 417 / 472 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 19.72 | 29 / 29 |
| spleen | 100% | 2103.60 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 25.94 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 5.53 | 1 / 1 |
| blood vessel | 100% | 1533.97 | 1334 / 1335 | 0% | 0 | 0 / 0 |
| adipose | 100% | 2046.90 | 1203 / 1204 | 0% | 0 | 0 / 0 |
| muscle | 99% | 871.92 | 794 / 803 | 0% | 0 | 0 / 0 |
| heart | 96% | 856.44 | 827 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 66% | 8.07 | 53 / 80 |
| peripheral blood | 56% | 1299.93 | 520 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0045746 | Biological process | negative regulation of Notch signaling pathway |
| GO_0045023 | Biological process | G0 to G1 transition |
| GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
| GO_0000307 | Cellular component | cyclin-dependent protein kinase holoenzyme complex |
| GO_0016592 | Cellular component | mediator complex |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_1990508 | Cellular component | CKM complex |
| GO_0005634 | Cellular component | nucleus |
| GO_0016538 | Molecular function | cyclin-dependent protein serine/threonine kinase regulator activity |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | CCNC |
| Protein name | Cyclin-C (SRB11 homolog) (hSRB11) Cyclin-C Cyclin C |
| Synonyms | hCG_1757197 |
| Description | FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . FUNCTION: Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase CDK8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex. . |
| Accessions | Q7Z4L3 J3KP90 ENST00000523985.5 [P24863-2] ENST00000518714.5 G5E954 Q5JV82 ENST00000326298.8 ENST00000486428.6 ENST00000524049.5 E5RIH8 ENST00000523799.5 [P24863-2] ENST00000627680.2 ENST00000369220.8 ENST00000484049.6 P24863 ENST00000520371.5 ENST00000482541.2 E5RFX8 E5RHL8 E5RI39 ENST00000520429.6 [P24863-1] ENST00000369217.8 Q05CF7 E5RFK5 H0YBQ5 ENST00000523961.5 |