Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 12 studies | 42% ± 18% | |
myofibroblast cell | 9 studies | 23% ± 16% | |
type I pneumocyte | 6 studies | 19% ± 3% | |
glutamatergic neuron | 5 studies | 30% ± 10% | |
podocyte | 4 studies | 50% ± 24% | |
connective tissue cell | 4 studies | 24% ± 5% | |
hepatic stellate cell | 3 studies | 41% ± 4% | |
renal beta-intercalated cell | 3 studies | 27% ± 4% | |
endothelial cell | 3 studies | 17% ± 1% | |
interneuron | 3 studies | 28% ± 11% | |
GABAergic neuron | 3 studies | 23% ± 4% | |
smooth muscle cell | 3 studies | 25% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 25% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 3048.39 | 576 / 578 | 46% | 2.42 | 535 / 1155 |
adrenal gland | 100% | 3034.57 | 257 / 258 | 43% | 5.73 | 99 / 230 |
ovary | 97% | 4946.67 | 175 / 180 | 21% | 0.64 | 90 / 430 |
uterus | 86% | 1475.28 | 147 / 170 | 30% | 2.64 | 138 / 459 |
kidney | 89% | 578.79 | 79 / 89 | 19% | 1.95 | 175 / 901 |
intestine | 91% | 3224.86 | 876 / 966 | 12% | 0.39 | 65 / 527 |
skin | 92% | 5702.37 | 1659 / 1809 | 8% | 0.72 | 40 / 472 |
breast | 71% | 525.37 | 326 / 459 | 23% | 0.64 | 255 / 1118 |
liver | 78% | 483.31 | 177 / 226 | 10% | 0.33 | 41 / 406 |
adipose | 88% | 1068.38 | 1063 / 1204 | 0% | 0 | 0 / 0 |
prostate | 47% | 332.02 | 116 / 245 | 38% | 0.83 | 191 / 502 |
stomach | 61% | 311.42 | 219 / 359 | 14% | 0.60 | 41 / 286 |
esophagus | 39% | 208.03 | 565 / 1445 | 22% | 0.59 | 40 / 183 |
bladder | 10% | 39.86 | 2 / 21 | 24% | 1.83 | 120 / 504 |
thymus | 28% | 128.31 | 183 / 653 | 5% | 0.15 | 29 / 605 |
pancreas | 3% | 8.08 | 9 / 328 | 21% | 0.95 | 38 / 178 |
brain | 13% | 65.33 | 337 / 2642 | 11% | 0.31 | 78 / 705 |
heart | 24% | 114.08 | 203 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 17% | 0.21 | 5 / 29 |
tonsil | 0% | 0 | 0 / 0 | 16% | 0.36 | 7 / 45 |
blood vessel | 5% | 25.00 | 64 / 1335 | 0% | 0 | 0 / 0 |
muscle | 3% | 10.72 | 22 / 803 | 0% | 0 | 0 / 0 |
spleen | 0% | 1.16 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1904977 | Biological process | lymphatic endothelial cell migration |
GO_0030324 | Biological process | lung development |
GO_0045766 | Biological process | positive regulation of angiogenesis |
GO_0010595 | Biological process | positive regulation of endothelial cell migration |
GO_0001946 | Biological process | lymphangiogenesis |
GO_1900748 | Biological process | positive regulation of vascular endothelial growth factor signaling pathway |
GO_1901492 | Biological process | positive regulation of lymphangiogenesis |
GO_0002040 | Biological process | sprouting angiogenesis |
GO_0003016 | Biological process | respiratory system process |
GO_0010575 | Biological process | positive regulation of vascular endothelial growth factor production |
GO_0010954 | Biological process | positive regulation of protein processing |
GO_0048845 | Biological process | venous blood vessel morphogenesis |
GO_0005615 | Cellular component | extracellular space |
GO_0005581 | Cellular component | collagen trimer |
GO_0031012 | Cellular component | extracellular matrix |
GO_0002020 | Molecular function | protease binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005518 | Molecular function | collagen binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CCBE1 |
Protein name | Collagen and calcium binding EGF domains 1 Collagen and calcium-binding EGF domain-containing protein 1 (Full of fluid protein homolog) |
Synonyms | KIAA1983 UNQ1921/PRO4395 |
Description | FUNCTION: Required for lymphangioblast budding and angiogenic sprouting from venous endothelium during embryogenesis. . |
Accessions | Q6UXH8 ENST00000695903.1 ENST00000649564.1 [Q6UXH8-1] A0A8Q3WKU2 ENST00000439986.9 [Q6UXH8-1] A0A3B3IRL6 A0A8Q3WKU1 ENST00000650467.2 ENST00000695904.1 |