Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 28% ± 12% | |
T cell | 8 studies | 19% ± 4% | |
microglial cell | 8 studies | 33% ± 12% | |
glutamatergic neuron | 7 studies | 44% ± 28% | |
astrocyte | 7 studies | 35% ± 16% | |
CD4-positive, alpha-beta T cell | 6 studies | 18% ± 2% | |
macrophage | 6 studies | 34% ± 15% | |
natural killer cell | 5 studies | 19% ± 3% | |
interneuron | 5 studies | 36% ± 22% | |
GABAergic neuron | 5 studies | 45% ± 24% | |
neuron | 4 studies | 27% ± 12% | |
retinal bipolar neuron | 4 studies | 17% ± 0% | |
retinal cone cell | 4 studies | 27% ± 9% | |
retinal pigment epithelial cell | 4 studies | 31% ± 10% | |
ciliated cell | 4 studies | 27% ± 17% | |
epithelial cell | 4 studies | 42% ± 24% | |
lymphocyte | 4 studies | 35% ± 11% | |
myeloid cell | 4 studies | 23% ± 4% | |
CD8-positive, alpha-beta T cell | 4 studies | 19% ± 2% | |
oligodendrocyte precursor cell | 4 studies | 30% ± 9% | |
monocyte | 4 studies | 22% ± 4% | |
fibroblast | 4 studies | 25% ± 7% | |
smooth muscle cell | 4 studies | 18% ± 1% | |
oligodendrocyte | 4 studies | 27% ± 7% | |
dendritic cell | 4 studies | 20% ± 3% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 20% ± 6% | |
CD8-positive, alpha-beta memory T cell | 3 studies | 20% ± 0% | |
gamma-delta T cell | 3 studies | 22% ± 6% | |
regulatory T cell | 3 studies | 22% ± 3% | |
basal cell | 3 studies | 35% ± 22% | |
endothelial cell of lymphatic vessel | 3 studies | 22% ± 4% | |
goblet cell | 3 studies | 39% ± 31% | |
type II pneumocyte | 3 studies | 19% ± 3% | |
mast cell | 3 studies | 23% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2416.83 | 1445 / 1445 | 100% | 8.25 | 183 / 183 |
lung | 100% | 3398.58 | 578 / 578 | 99% | 7.64 | 1141 / 1155 |
breast | 100% | 2965.07 | 459 / 459 | 99% | 8.66 | 1102 / 1118 |
thymus | 100% | 2935.47 | 653 / 653 | 98% | 6.69 | 594 / 605 |
prostate | 100% | 2713.27 | 245 / 245 | 98% | 7.44 | 492 / 502 |
pancreas | 100% | 2786.93 | 328 / 328 | 98% | 6.06 | 174 / 178 |
ovary | 100% | 3525.69 | 180 / 180 | 97% | 6.21 | 419 / 430 |
stomach | 100% | 1846.10 | 359 / 359 | 97% | 7.06 | 277 / 286 |
intestine | 100% | 2572.86 | 966 / 966 | 96% | 6.26 | 508 / 527 |
uterus | 100% | 2837.58 | 170 / 170 | 96% | 6.25 | 439 / 459 |
kidney | 100% | 1792.81 | 89 / 89 | 96% | 6.18 | 861 / 901 |
bladder | 100% | 2218.33 | 21 / 21 | 95% | 5.92 | 481 / 504 |
brain | 96% | 1306.19 | 2544 / 2642 | 97% | 5.40 | 686 / 705 |
skin | 100% | 3072.28 | 1809 / 1809 | 93% | 6.00 | 439 / 472 |
adrenal gland | 100% | 1963.98 | 258 / 258 | 83% | 3.43 | 192 / 230 |
liver | 100% | 1432.66 | 226 / 226 | 68% | 2.76 | 277 / 406 |
adipose | 100% | 3070.39 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2616.94 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.74 | 29 / 29 |
muscle | 100% | 1760.30 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2609.54 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.47 | 1 / 1 |
peripheral blood | 97% | 2261.84 | 901 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 1468.93 | 834 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 91% | 6.72 | 41 / 45 |
eye | 0% | 0 | 0 / 0 | 54% | 1.81 | 43 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0006997 | Biological process | nucleus organization |
GO_0007601 | Biological process | visual perception |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0007026 | Biological process | negative regulation of microtubule depolymerization |
GO_0000226 | Biological process | microtubule cytoskeleton organization |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0016363 | Cellular component | nuclear matrix |
GO_0005730 | Cellular component | nucleolus |
GO_0000124 | Cellular component | SAGA complex |
GO_0033276 | Cellular component | transcription factor TFTC complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | ATXN7 |
Protein name | Ataxin 7 Ataxin-7 (Spinocerebellar ataxia type 7 protein) |
Synonyms | hCG_22237 SCA7 |
Description | FUNCTION: Acts as a component of the STAGA transcription coactivator-HAT complex . Mediates the interaction of STAGA complex with the CRX and is involved in CRX-dependent gene activation . Necessary for microtubule cytoskeleton stabilization . . |
Accessions | A0A1B0GX67 A0A2R8YDD6 ENST00000474112.5 ENST00000487717.5 [O15265-1] ENST00000295900.10 [O15265-1] ENST00000522345.2 [O15265-2] ENST00000474513.6 ENST00000484332.1 [O15265-3] O15265 ENST00000674280.1 [O15265-1] |