Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 12 studies | 19% ± 3% | |
ciliated cell | 11 studies | 24% ± 7% | |
endothelial cell | 9 studies | 23% ± 7% | |
type I pneumocyte | 8 studies | 26% ± 8% | |
retinal rod cell | 7 studies | 46% ± 15% | |
astrocyte | 7 studies | 28% ± 11% | |
retinal cone cell | 6 studies | 36% ± 8% | |
epithelial cell | 4 studies | 25% ± 6% | |
endothelial cell of lymphatic vessel | 4 studies | 22% ± 6% | |
endothelial cell of vascular tree | 4 studies | 23% ± 8% | |
pericyte | 4 studies | 18% ± 1% | |
GABAergic neuron | 4 studies | 36% ± 12% | |
glutamatergic neuron | 4 studies | 50% ± 17% | |
oligodendrocyte | 4 studies | 23% ± 4% | |
microglial cell | 3 studies | 17% ± 0% | |
type II pneumocyte | 3 studies | 19% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 20% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 635.40 | 180 / 180 | 100% | 19.10 | 429 / 430 |
esophagus | 100% | 563.44 | 1441 / 1445 | 100% | 16.34 | 183 / 183 |
lung | 100% | 950.48 | 578 / 578 | 100% | 12.78 | 1150 / 1155 |
brain | 100% | 438.70 | 2636 / 2642 | 100% | 12.03 | 702 / 705 |
breast | 100% | 778.67 | 459 / 459 | 98% | 10.47 | 1100 / 1118 |
thymus | 100% | 926.81 | 653 / 653 | 98% | 20.37 | 590 / 605 |
kidney | 100% | 471.43 | 89 / 89 | 97% | 10.72 | 878 / 901 |
prostate | 100% | 556.24 | 244 / 245 | 97% | 9.84 | 488 / 502 |
uterus | 100% | 919.01 | 170 / 170 | 96% | 11.85 | 441 / 459 |
stomach | 97% | 381.76 | 348 / 359 | 96% | 7.68 | 274 / 286 |
bladder | 100% | 552.90 | 21 / 21 | 92% | 7.10 | 464 / 504 |
intestine | 99% | 523.43 | 954 / 966 | 93% | 6.51 | 491 / 527 |
adrenal gland | 100% | 364.84 | 258 / 258 | 91% | 4.34 | 210 / 230 |
pancreas | 92% | 232.24 | 301 / 328 | 98% | 8.40 | 174 / 178 |
skin | 100% | 694.48 | 1803 / 1809 | 89% | 7.87 | 418 / 472 |
liver | 94% | 262.35 | 212 / 226 | 72% | 3.45 | 293 / 406 |
adipose | 100% | 845.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 826.75 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 404.09 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 11.90 | 44 / 45 |
heart | 97% | 327.92 | 831 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 86% | 5.99 | 25 / 29 |
muscle | 47% | 81.51 | 378 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 38% | 1.48 | 30 / 80 |
peripheral blood | 32% | 156.63 | 293 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_0070986 | Biological process | left/right axis specification |
GO_0001947 | Biological process | heart looping |
GO_0021532 | Biological process | neural tube patterning |
GO_0021830 | Biological process | interneuron migration from the subpallium to the cortex |
GO_0009953 | Biological process | dorsal/ventral pattern formation |
GO_0097500 | Biological process | receptor localization to non-motile cilium |
GO_0021943 | Biological process | formation of radial glial scaffolds |
GO_0031514 | Cellular component | motile cilium |
GO_0060170 | Cellular component | ciliary membrane |
GO_0005930 | Cellular component | axoneme |
GO_0097730 | Cellular component | non-motile cilium |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | ARL13B |
Protein name | ADP ribosylation factor like GTPase 13B (cDNA FLJ60832, highly similar to Homo sapiens ADP-ribosylation factor-like 2-like 1 (ARL2L1), transcript variant 1, mRNA) Alternative protein ARL13B ADP ribosylation factor like GTPase 13B ADP-ribosylation factor-like protein 13B (ADP-ribosylation factor-like protein 2-like 1) (ARL2-like protein 1) |
Synonyms | ARL2L1 |
Description | FUNCTION: Cilium-specific protein required to control the microtubule-based, ciliary axoneme structure. May act by maintaining the association between IFT subcomplexes A and B. Binds GTP but is not able to hydrolyze it; the GTPase activity remains unclear. Required to pattern the neural tube. Involved in cerebral cortex development: required for the initial formation of a polarized radial glial scaffold, the first step in the construction of the cerebral cortex, by regulating ciliary signaling. Regulates the migration and placement of postmitotic interneurons in the developing cerebral cortex. May regulate endocytic recycling traffic; however, additional evidence is required to confirm these data. . |
Accessions | A0A7P0Z4S0 F8W837 ENST00000679654.1 ENST00000460371.5 A0A7P0TAL8 ENST00000679872.1 ENST00000679666.1 A0A7P0T892 ENST00000679587.1 ENST00000335438.7 ENST00000679607.1 A0A7P0T9A8 ENST00000679657.1 ENST00000471138.5 [Q3SXY8-1] ENST00000303097.11 [Q3SXY8-2] A0A7P0T9C1 ENST00000680430.1 ENST00000486562.2 A0A7P0Z407 A0A7P0T8M9 ENST00000679739.1 A0A7P0T969 ENST00000679404.1 A0A7P0T8G9 F8WAY0 ENST00000394222.8 [Q3SXY8-1] A0A7P0T933 ENST00000680414.1 L0R6C8 A0A7P0Z473 ENST00000679601.1 ENST00000681380.1 ENST00000681013.1 ENST00000535334.5 [Q3SXY8-3] ENST00000681247.1 ENST00000681655.1 Q3SXY8 A0A7P0TAS1 A0A7P0Z4M2 B4DRI8 |