Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 24% ± 9% | |
oligodendrocyte | 13 studies | 32% ± 13% | |
type I pneumocyte | 10 studies | 31% ± 11% | |
macrophage | 9 studies | 27% ± 7% | |
myeloid cell | 7 studies | 24% ± 8% | |
type II pneumocyte | 7 studies | 26% ± 10% | |
B cell | 6 studies | 19% ± 2% | |
classical monocyte | 6 studies | 27% ± 11% | |
monocyte | 5 studies | 21% ± 3% | |
non-classical monocyte | 5 studies | 25% ± 13% | |
microglial cell | 5 studies | 26% ± 7% | |
smooth muscle cell | 5 studies | 18% ± 3% | |
fibroblast | 5 studies | 18% ± 3% | |
pericyte | 4 studies | 20% ± 2% | |
epithelial cell | 4 studies | 22% ± 4% | |
abnormal cell | 4 studies | 20% ± 2% | |
GABAergic neuron | 4 studies | 20% ± 5% | |
glutamatergic neuron | 4 studies | 33% ± 19% | |
conventional dendritic cell | 3 studies | 32% ± 13% | |
endothelial cell of artery | 3 studies | 18% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 4% | |
dendritic cell | 3 studies | 36% ± 16% | |
naive B cell | 3 studies | 17% ± 1% | |
brush cell | 3 studies | 31% ± 9% | |
neuron | 3 studies | 28% ± 8% | |
adipocyte | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 3950.87 | 180 / 180 | 100% | 48.92 | 430 / 430 |
intestine | 100% | 5582.12 | 966 / 966 | 100% | 28.80 | 526 / 527 |
esophagus | 100% | 4625.84 | 1441 / 1445 | 100% | 27.22 | 183 / 183 |
breast | 100% | 6195.79 | 459 / 459 | 100% | 48.36 | 1114 / 1118 |
lung | 100% | 12696.80 | 578 / 578 | 99% | 33.92 | 1148 / 1155 |
thymus | 100% | 7244.22 | 653 / 653 | 99% | 48.93 | 601 / 605 |
uterus | 100% | 6396.01 | 170 / 170 | 99% | 35.58 | 455 / 459 |
brain | 99% | 6786.77 | 2616 / 2642 | 100% | 58.17 | 704 / 705 |
bladder | 100% | 5393.76 | 21 / 21 | 99% | 25.35 | 497 / 504 |
stomach | 98% | 4276.64 | 353 / 359 | 98% | 27.33 | 281 / 286 |
kidney | 99% | 3291.99 | 88 / 89 | 93% | 25.27 | 842 / 901 |
skin | 92% | 3929.30 | 1667 / 1809 | 100% | 76.16 | 470 / 472 |
prostate | 99% | 4019.80 | 243 / 245 | 63% | 7.29 | 317 / 502 |
pancreas | 42% | 760.08 | 137 / 328 | 97% | 36.44 | 172 / 178 |
adrenal gland | 73% | 1395.30 | 189 / 258 | 38% | 5.92 | 87 / 230 |
adipose | 100% | 7133.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 64.64 | 29 / 29 |
spleen | 100% | 9485.30 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 8537.51 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 9556.99 | 923 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 3482.36 | 852 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 22.10 | 43 / 45 |
eye | 0% | 0 | 0 / 0 | 94% | 13.49 | 75 / 80 |
liver | 23% | 444.03 | 51 / 226 | 49% | 9.77 | 199 / 406 |
muscle | 61% | 1216.39 | 492 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0055059 | Biological process | asymmetric neuroblast division |
GO_0045087 | Biological process | innate immune response |
GO_2001224 | Biological process | positive regulation of neuron migration |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0006886 | Biological process | intracellular protein transport |
GO_0007026 | Biological process | negative regulation of microtubule depolymerization |
GO_0051092 | Biological process | positive regulation of NF-kappaB transcription factor activity |
GO_0071356 | Biological process | cellular response to tumor necrosis factor |
GO_0050731 | Biological process | positive regulation of peptidyl-tyrosine phosphorylation |
GO_0060546 | Biological process | negative regulation of necroptotic process |
GO_0035023 | Biological process | regulation of Rho protein signal transduction |
GO_0007015 | Biological process | actin filament organization |
GO_1902219 | Biological process | negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress |
GO_1902042 | Biological process | negative regulation of extrinsic apoptotic signaling pathway via death domain receptors |
GO_0071474 | Biological process | cellular hyperosmotic response |
GO_0000902 | Biological process | cell morphogenesis |
GO_0071225 | Biological process | cellular response to muramyl dipeptide |
GO_0045666 | Biological process | positive regulation of neuron differentiation |
GO_0032760 | Biological process | positive regulation of tumor necrosis factor production |
GO_0042127 | Biological process | regulation of cell population proliferation |
GO_0032755 | Biological process | positive regulation of interleukin-6 production |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0032587 | Cellular component | ruffle membrane |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005874 | Cellular component | microtubule |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005925 | Cellular component | focal adhesion |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0031982 | Cellular component | vesicle |
GO_0005819 | Cellular component | spindle |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0031267 | Molecular function | small GTPase binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0008017 | Molecular function | microtubule binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ARHGEF2 |
Protein name | Rho/Rac guanine nucleotide exchange factor 2 Rho guanine nucleotide exchange factor 2 (Guanine nucleotide exchange factor H1) Rho guanine nucleotide exchange factor 2 (Guanine nucleotide exchange factor H1) (GEF-H1) (Microtubule-regulated Rho-GEF) (Proliferating cell nucleolar antigen p40) |
Synonyms | LFP40 KIAA0651 |
Description | FUNCTION: Activates Rho-GTPases by promoting the exchange of GDP for GTP. May be involved in epithelial barrier permeability, cell motility and polarization, dendritic spine morphology, antigen presentation, leukemic cell differentiation, cell cycle regulation, innate immune response, and cancer. Binds Rac-GTPases, but does not seem to promote nucleotide exchange activity toward Rac-GTPases, which was uniquely reported in PubMed:9857026. May stimulate instead the cortical activity of Rac. Inactive toward CDC42, TC10, or Ras-GTPases. Forms an intracellular sensing system along with NOD1 for the detection of microbial effectors during cell invasion by pathogens. Required for RHOA and RIP2 dependent NF-kappaB signaling pathways activation upon S.flexneri cell invasion. Involved not only in sensing peptidoglycan (PGN)-derived muropeptides through NOD1 that is independent of its GEF activity, but also in the activation of NF-kappaB by Shigella effector proteins (IpgB2 and OspB) which requires its GEF activity and the activation of RhoA. Involved in innate immune signaling transduction pathway promoting cytokine IL6/interleukin-6 and TNF-alpha secretion in macrophage upon stimulation by bacterial peptidoglycans; acts as a signaling intermediate between NOD2 receptor and RIPK2 kinase. Contributes to the tyrosine phosphorylation of RIPK2 through Src tyrosine kinase leading to NF-kappaB activation by NOD2. Overexpression activates Rho-, but not Rac-GTPases, and increases paracellular permeability (By similarity). Involved in neuronal progenitor cell division and differentiation . Involved in the migration of precerebellar neurons (By similarity). . |
Accessions | ENST00000495070.2 V9GYM8 ENST00000471589.5 V9GYF0 ENST00000696600.1 ENST00000497907.5 V9GZ14 ENST00000313695.11 [Q92974-3] ENST00000470541.6 V9GY94 ENST00000470874.5 A0A5F9ZI21 A0A8Q3SIN5 ENST00000361247.9 [Q92974-1] Q92974 V9GZ58 V9GYG5 ENST00000462460.6 ENST00000696601.1 ENST00000673475.1 ENST00000313667.8 [Q92974-2] ENST00000423422.6 A0A1Y8EN19 A0A8Q3SIV8 V9GYF5 ENST00000609707.1 |