Name | Number of supported studies | Average coverage | |
---|---|---|---|
B cell | 21 studies | 20% ± 5% | |
memory B cell | 13 studies | 20% ± 4% | |
endothelial cell | 12 studies | 24% ± 7% | |
microglial cell | 10 studies | 29% ± 11% | |
macrophage | 10 studies | 28% ± 11% | |
dendritic cell | 9 studies | 27% ± 10% | |
classical monocyte | 8 studies | 21% ± 7% | |
naive B cell | 8 studies | 20% ± 3% | |
non-classical monocyte | 7 studies | 21% ± 8% | |
glutamatergic neuron | 7 studies | 43% ± 25% | |
ciliated cell | 7 studies | 24% ± 9% | |
oligodendrocyte | 7 studies | 25% ± 7% | |
myeloid cell | 6 studies | 25% ± 9% | |
epithelial cell | 6 studies | 39% ± 15% | |
basal cell | 6 studies | 23% ± 11% | |
type II pneumocyte | 6 studies | 18% ± 3% | |
GABAergic neuron | 6 studies | 38% ± 19% | |
astrocyte | 6 studies | 28% ± 9% | |
monocyte | 6 studies | 28% ± 8% | |
T cell | 5 studies | 20% ± 6% | |
regulatory T cell | 5 studies | 18% ± 2% | |
oligodendrocyte precursor cell | 5 studies | 26% ± 8% | |
neuron | 4 studies | 28% ± 8% | |
precursor B cell | 4 studies | 17% ± 1% | |
plasma cell | 4 studies | 27% ± 8% | |
club cell | 4 studies | 20% ± 2% | |
retinal rod cell | 4 studies | 17% ± 1% | |
goblet cell | 4 studies | 31% ± 21% | |
endothelial cell of lymphatic vessel | 4 studies | 19% ± 3% | |
interneuron | 4 studies | 40% ± 21% | |
plasmacytoid dendritic cell | 4 studies | 21% ± 5% | |
natural killer cell | 3 studies | 17% ± 1% | |
conventional dendritic cell | 3 studies | 26% ± 7% | |
hematopoietic precursor cell | 3 studies | 27% ± 5% | |
squamous epithelial cell | 3 studies | 36% ± 19% | |
mononuclear phagocyte | 3 studies | 23% ± 5% | |
lymphocyte | 3 studies | 23% ± 4% | |
Mueller cell | 3 studies | 20% ± 2% | |
leukocyte | 3 studies | 22% ± 5% | |
alveolar macrophage | 3 studies | 32% ± 8% | |
granule cell | 3 studies | 21% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2666.66 | 1445 / 1445 | 100% | 46.16 | 183 / 183 |
lung | 100% | 2571.76 | 578 / 578 | 100% | 43.05 | 1155 / 1155 |
ovary | 100% | 2210.55 | 180 / 180 | 100% | 30.90 | 430 / 430 |
prostate | 100% | 3239.85 | 245 / 245 | 100% | 63.78 | 502 / 502 |
breast | 100% | 2727.31 | 459 / 459 | 100% | 64.77 | 1117 / 1118 |
bladder | 100% | 2749.48 | 21 / 21 | 100% | 37.45 | 503 / 504 |
uterus | 100% | 2555.69 | 170 / 170 | 100% | 35.27 | 458 / 459 |
brain | 100% | 2437.34 | 2634 / 2642 | 100% | 25.63 | 705 / 705 |
kidney | 100% | 2828.94 | 89 / 89 | 100% | 42.18 | 897 / 901 |
thymus | 100% | 2505.31 | 653 / 653 | 100% | 37.55 | 602 / 605 |
pancreas | 100% | 1948.48 | 328 / 328 | 99% | 37.36 | 177 / 178 |
intestine | 100% | 2978.81 | 966 / 966 | 99% | 39.33 | 523 / 527 |
stomach | 100% | 2920.04 | 359 / 359 | 99% | 38.14 | 283 / 286 |
liver | 100% | 1612.88 | 226 / 226 | 98% | 23.37 | 397 / 406 |
adrenal gland | 100% | 2429.66 | 258 / 258 | 96% | 27.21 | 221 / 230 |
skin | 100% | 3499.43 | 1809 / 1809 | 93% | 24.17 | 440 / 472 |
adipose | 100% | 2346.22 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2667.61 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 44.56 | 29 / 29 |
spleen | 100% | 3051.27 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.16 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.38 | 1 / 1 |
muscle | 100% | 1412.73 | 800 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3703.96 | 921 / 929 | 0% | 0 | 0 / 0 |
heart | 94% | 982.46 | 806 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 70% | 11.04 | 56 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0046907 | Biological process | intracellular transport |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0030121 | Cellular component | AP-1 adaptor complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0030276 | Molecular function | clathrin binding |
Gene name | AFTPH |
Protein name | Aftiphilin |
Synonyms | AFTH |
Description | FUNCTION: Component of clathrin-coated vesicles . Component of the aftiphilin/p200/gamma-synergin complex, which plays roles in AP1G1/AP-1-mediated protein trafficking including the trafficking of transferrin from early to recycling endosomes, and the membrane trafficking of furin and the lysosomal enzyme cathepsin D between the trans-Golgi network (TGN) and endosomes . . |
Accessions | A0A8Q3WKU6 ENST00000695865.1 ENST00000695867.1 ENST00000695866.1 ENST00000409933.6 [Q6ULP2-1] ENST00000238856.8 [Q6ULP2-6] A0A8Q3SI81 A0A0U1RR74 ENST00000695864.1 [Q6ULP2-9] A0A8Q3WM48 Q6ULP2 ENST00000695960.1 A0A8Q3SIA4 ENST00000695869.1 ENST00000409183.5 ENST00000487769.2 A0A8Q3SI61 B8ZZI9 |