Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 35% ± 12% | |
astrocyte | 15 studies | 35% ± 18% | |
microglial cell | 13 studies | 38% ± 13% | |
oligodendrocyte precursor cell | 12 studies | 32% ± 12% | |
macrophage | 11 studies | 33% ± 13% | |
oligodendrocyte | 11 studies | 34% ± 12% | |
glutamatergic neuron | 10 studies | 42% ± 24% | |
GABAergic neuron | 9 studies | 40% ± 20% | |
pericyte | 9 studies | 32% ± 13% | |
adipocyte | 9 studies | 31% ± 11% | |
fibroblast | 8 studies | 31% ± 9% | |
epithelial cell | 7 studies | 30% ± 14% | |
interneuron | 6 studies | 43% ± 23% | |
endothelial cell of lymphatic vessel | 6 studies | 35% ± 14% | |
neuron | 5 studies | 40% ± 19% | |
cardiac muscle cell | 5 studies | 37% ± 12% | |
myeloid cell | 5 studies | 30% ± 10% | |
monocyte | 5 studies | 30% ± 8% | |
smooth muscle cell | 5 studies | 27% ± 5% | |
type I pneumocyte | 5 studies | 28% ± 9% | |
type II pneumocyte | 5 studies | 27% ± 9% | |
granule cell | 4 studies | 26% ± 6% | |
B cell | 4 studies | 26% ± 6% | |
dendritic cell | 4 studies | 23% ± 6% | |
mast cell | 4 studies | 26% ± 8% | |
mesothelial cell | 4 studies | 30% ± 9% | |
T cell | 4 studies | 26% ± 7% | |
club cell | 4 studies | 28% ± 8% | |
GABAergic interneuron | 3 studies | 28% ± 4% | |
progenitor cell | 3 studies | 28% ± 3% | |
CD4-positive, alpha-beta T cell | 3 studies | 27% ± 1% | |
CD8-positive, alpha-beta T cell | 3 studies | 21% ± 3% | |
vein endothelial cell | 3 studies | 34% ± 16% | |
retinal rod cell | 3 studies | 30% ± 7% | |
endothelial cell of vascular tree | 3 studies | 32% ± 18% | |
hepatocyte | 3 studies | 56% ± 19% | |
retinal pigment epithelial cell | 3 studies | 36% ± 15% | |
ependymal cell | 3 studies | 30% ± 14% | |
alveolar macrophage | 3 studies | 37% ± 13% | |
capillary endothelial cell | 3 studies | 29% ± 5% | |
natural killer cell | 3 studies | 26% ± 2% | |
lymphocyte | 3 studies | 39% ± 9% | |
basal cell | 3 studies | 40% ± 18% | |
mural cell | 3 studies | 38% ± 9% | |
mucus secreting cell | 3 studies | 26% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1037.36 | 1445 / 1445 | 100% | 4.56 | 183 / 183 |
breast | 100% | 1047.09 | 459 / 459 | 99% | 5.88 | 1112 / 1118 |
prostate | 100% | 978.20 | 245 / 245 | 99% | 4.86 | 499 / 502 |
thymus | 100% | 1013.13 | 653 / 653 | 99% | 5.21 | 600 / 605 |
skin | 100% | 1061.39 | 1809 / 1809 | 98% | 5.25 | 464 / 472 |
brain | 100% | 649.16 | 2630 / 2642 | 98% | 4.62 | 693 / 705 |
intestine | 100% | 1190.21 | 966 / 966 | 98% | 3.09 | 514 / 527 |
stomach | 100% | 784.03 | 359 / 359 | 97% | 3.38 | 278 / 286 |
lung | 100% | 942.40 | 578 / 578 | 97% | 3.84 | 1122 / 1155 |
pancreas | 99% | 461.83 | 324 / 328 | 98% | 3.67 | 175 / 178 |
uterus | 100% | 1344.97 | 170 / 170 | 97% | 3.93 | 445 / 459 |
bladder | 100% | 1151.48 | 21 / 21 | 97% | 3.23 | 487 / 504 |
kidney | 100% | 665.69 | 89 / 89 | 95% | 3.71 | 858 / 901 |
adrenal gland | 100% | 743.91 | 258 / 258 | 90% | 2.98 | 207 / 230 |
liver | 100% | 420.86 | 226 / 226 | 88% | 2.40 | 358 / 406 |
ovary | 100% | 1222.38 | 180 / 180 | 88% | 2.25 | 379 / 430 |
adipose | 100% | 972.44 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1097.14 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 4.71 | 29 / 29 |
muscle | 100% | 931.70 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1058.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 4.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.20 | 1 / 1 |
heart | 98% | 740.85 | 847 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 3.52 | 76 / 80 |
peripheral blood | 94% | 645.78 | 872 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005634 | Cellular component | nucleus |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003677 | Molecular function | DNA binding |
Gene name | ZNF407 |
Protein name | Zinc finger protein 407 |
Synonyms | KIAA1703 |
Description | FUNCTION: May be involved in transcriptional regulation. |
Accessions | ENST00000581829.2 A0A087WYH1 A0A087WV78 ENST00000577538.5 [Q9C0G0-2] ENST00000584235.5 ENST00000309902.10 [Q9C0G0-3] ENST00000299687.10 [Q9C0G0-1] ENST00000582337.5 [Q9C0G0-3] Q9C0G0 |