Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 39% ± 20% | |
endothelial cell | 18 studies | 36% ± 14% | |
oligodendrocyte | 15 studies | 47% ± 17% | |
oligodendrocyte precursor cell | 13 studies | 37% ± 14% | |
microglial cell | 13 studies | 33% ± 16% | |
glutamatergic neuron | 12 studies | 56% ± 27% | |
GABAergic neuron | 11 studies | 52% ± 25% | |
fibroblast | 11 studies | 30% ± 8% | |
adipocyte | 10 studies | 60% ± 23% | |
macrophage | 9 studies | 33% ± 14% | |
ciliated cell | 8 studies | 41% ± 24% | |
neuron | 7 studies | 41% ± 22% | |
interneuron | 6 studies | 60% ± 25% | |
cardiac muscle cell | 6 studies | 58% ± 23% | |
mast cell | 6 studies | 24% ± 10% | |
endothelial cell of lymphatic vessel | 6 studies | 40% ± 8% | |
pericyte | 6 studies | 30% ± 8% | |
smooth muscle cell | 6 studies | 29% ± 8% | |
epithelial cell | 5 studies | 39% ± 20% | |
mesothelial cell | 5 studies | 37% ± 24% | |
type I pneumocyte | 5 studies | 28% ± 6% | |
granule cell | 4 studies | 36% ± 18% | |
B cell | 4 studies | 26% ± 13% | |
dendritic cell | 4 studies | 22% ± 6% | |
Mueller cell | 4 studies | 31% ± 12% | |
amacrine cell | 4 studies | 48% ± 14% | |
retina horizontal cell | 4 studies | 39% ± 13% | |
retinal cone cell | 4 studies | 44% ± 13% | |
retinal ganglion cell | 4 studies | 48% ± 23% | |
retinal rod cell | 4 studies | 42% ± 6% | |
T cell | 4 studies | 27% ± 8% | |
club cell | 4 studies | 26% ± 7% | |
type II pneumocyte | 4 studies | 24% ± 4% | |
basal cell | 4 studies | 38% ± 25% | |
GABAergic interneuron | 3 studies | 47% ± 4% | |
GABAergic amacrine cell | 3 studies | 48% ± 12% | |
OFF-bipolar cell | 3 studies | 35% ± 9% | |
ON-bipolar cell | 3 studies | 38% ± 14% | |
glycinergic amacrine cell | 3 studies | 46% ± 6% | |
myeloid cell | 3 studies | 25% ± 6% | |
endothelial cell of vascular tree | 3 studies | 33% ± 10% | |
hepatocyte | 3 studies | 56% ± 19% | |
retinal pigment epithelial cell | 3 studies | 40% ± 31% | |
ependymal cell | 3 studies | 57% ± 11% | |
alveolar macrophage | 3 studies | 36% ± 7% | |
capillary endothelial cell | 3 studies | 20% ± 4% | |
monocyte | 3 studies | 36% ± 7% | |
respiratory goblet cell | 3 studies | 38% ± 11% | |
mucus secreting cell | 3 studies | 30% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 356.70 | 2626 / 2642 | 100% | 2.99 | 703 / 705 |
ovary | 100% | 536.56 | 180 / 180 | 94% | 2.22 | 405 / 430 |
breast | 100% | 521.52 | 459 / 459 | 94% | 2.13 | 1046 / 1118 |
thymus | 100% | 445.50 | 653 / 653 | 93% | 1.90 | 561 / 605 |
skin | 100% | 400.46 | 1809 / 1809 | 89% | 2.13 | 418 / 472 |
kidney | 100% | 328.03 | 89 / 89 | 88% | 2.14 | 791 / 901 |
prostate | 100% | 315.71 | 245 / 245 | 87% | 1.50 | 436 / 502 |
adrenal gland | 100% | 335.05 | 258 / 258 | 83% | 1.58 | 190 / 230 |
lung | 99% | 379.25 | 575 / 578 | 82% | 1.86 | 946 / 1155 |
esophagus | 99% | 224.09 | 1436 / 1445 | 80% | 1.74 | 147 / 183 |
pancreas | 98% | 169.44 | 321 / 328 | 69% | 1.01 | 122 / 178 |
uterus | 100% | 511.92 | 170 / 170 | 64% | 1.25 | 296 / 459 |
stomach | 100% | 300.96 | 359 / 359 | 44% | 0.73 | 127 / 286 |
bladder | 100% | 315.57 | 21 / 21 | 43% | 0.76 | 217 / 504 |
intestine | 99% | 272.67 | 952 / 966 | 29% | 0.42 | 151 / 527 |
liver | 92% | 130.90 | 208 / 226 | 26% | 0.47 | 107 / 406 |
adipose | 100% | 565.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 275.06 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 471.50 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 360.21 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 429.40 | 843 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 1.35 | 23 / 29 |
tonsil | 0% | 0 | 0 / 0 | 71% | 1.17 | 32 / 45 |
peripheral blood | 60% | 141.19 | 555 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 36% | 0.55 | 29 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060271 | Biological process | cilium assembly |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_2000114 | Biological process | regulation of establishment of cell polarity |
GO_0032185 | Biological process | septin cytoskeleton organization |
GO_0045184 | Biological process | establishment of protein localization |
GO_0042733 | Biological process | embryonic digit morphogenesis |
GO_0032880 | Biological process | regulation of protein localization |
GO_0001822 | Biological process | kidney development |
GO_0072359 | Biological process | circulatory system development |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0055123 | Biological process | digestive system development |
GO_0060021 | Biological process | roof of mouth development |
GO_0016476 | Biological process | regulation of embryonic cell shape |
GO_0060541 | Biological process | respiratory system development |
GO_0044782 | Biological process | cilium organization |
GO_0051893 | Biological process | regulation of focal adhesion assembly |
GO_0090521 | Biological process | podocyte cell migration |
GO_0002093 | Biological process | auditory receptor cell morphogenesis |
GO_0010762 | Biological process | regulation of fibroblast migration |
GO_0043010 | Biological process | camera-type eye development |
GO_0042073 | Biological process | intraciliary transport |
GO_0021915 | Biological process | neural tube development |
GO_0007399 | Biological process | nervous system development |
GO_0043587 | Biological process | tongue morphogenesis |
GO_1900027 | Biological process | regulation of ruffle assembly |
GO_0001736 | Biological process | establishment of planar polarity |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0005930 | Cellular component | axoneme |
GO_0097541 | Cellular component | axonemal basal plate |
GO_0005929 | Cellular component | cilium |
GO_0005938 | Cellular component | cell cortex |
Gene name | WDPCP |
Protein name | WD repeat containing planar cell polarity effector WD repeat-containing and planar cell polarity effector protein fritz homolog (hFRTZ) (Bardet-Biedl syndrome 15 protein) (WD repeat-containing and planar cell polarity effector protein) |
Synonyms | C2orf86 BBS15 FRITZ |
Description | FUNCTION: Probable effector of the planar cell polarity signaling pathway which regulates the septin cytoskeleton in both ciliogenesis and collective cell movements. Together with FUZ and WDPCP proposed to function as core component of the CPLANE (ciliogenesis and planar polarity effectors) complex involved in the recruitment of peripheral IFT-A proteins to basal bodies (By similarity). . |
Accessions | C9JDS5 ENST00000431065.1 ENST00000473678.1 E9PFG9 ENST00000409120.5 F8WBT2 ENST00000398544.7 [O95876-3] H7BZ13 ENST00000418148.5 ENST00000272321.12 [O95876-1] ENST00000409562.7 [O95876-2] O95876 A0A1D5RMS8 ENST00000417238.5 ENST00000409199.5 ENST00000409354.6 H7C375 |