Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 41 studies | 50% ± 20% | |
classical monocyte | 28 studies | 83% ± 11% | |
monocyte | 25 studies | 56% ± 20% | |
non-classical monocyte | 19 studies | 37% ± 15% | |
oligodendrocyte precursor cell | 17 studies | 76% ± 22% | |
macrophage | 16 studies | 36% ± 18% | |
connective tissue cell | 16 studies | 56% ± 22% | |
conventional dendritic cell | 14 studies | 38% ± 18% | |
astrocyte | 14 studies | 34% ± 12% | |
dendritic cell | 13 studies | 39% ± 13% | |
pericyte | 13 studies | 40% ± 19% | |
myofibroblast cell | 10 studies | 50% ± 17% | |
endothelial cell | 8 studies | 28% ± 17% | |
smooth muscle cell | 8 studies | 36% ± 11% | |
myeloid cell | 8 studies | 45% ± 28% | |
alveolar macrophage | 7 studies | 28% ± 11% | |
GABAergic neuron | 7 studies | 30% ± 14% | |
neutrophil | 7 studies | 61% ± 16% | |
progenitor cell | 5 studies | 42% ± 15% | |
abnormal cell | 5 studies | 48% ± 22% | |
epithelial cell | 5 studies | 39% ± 15% | |
interneuron | 5 studies | 46% ± 24% | |
neuron | 5 studies | 42% ± 19% | |
adventitial cell | 5 studies | 50% ± 10% | |
intermediate monocyte | 5 studies | 63% ± 23% | |
mononuclear phagocyte | 4 studies | 41% ± 15% | |
T cell | 3 studies | 24% ± 4% | |
platelet | 3 studies | 47% ± 22% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 75% ± 5% | |
neural crest cell | 3 studies | 61% ± 5% | |
glial cell | 3 studies | 49% ± 22% | |
lymphocyte | 3 studies | 25% ± 6% | |
inflammatory macrophage | 3 studies | 55% ± 6% | |
vein endothelial cell | 3 studies | 26% ± 6% | |
neural progenitor cell | 3 studies | 39% ± 7% | |
glutamatergic neuron | 3 studies | 27% ± 11% | |
adipocyte | 3 studies | 47% ± 36% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 93% | 6658.04 | 427 / 459 | 92% | 101.57 | 1023 / 1118 |
lung | 99% | 15171.08 | 573 / 578 | 80% | 48.13 | 921 / 1155 |
brain | 59% | 2211.63 | 1550 / 2642 | 97% | 94.64 | 686 / 705 |
skin | 81% | 8470.22 | 1469 / 1809 | 43% | 27.47 | 204 / 472 |
bladder | 67% | 6125.76 | 14 / 21 | 53% | 26.27 | 265 / 504 |
intestine | 61% | 3352.22 | 590 / 966 | 57% | 29.06 | 299 / 527 |
esophagus | 50% | 2909.06 | 727 / 1445 | 67% | 38.96 | 123 / 183 |
kidney | 33% | 2141.37 | 29 / 89 | 78% | 81.24 | 699 / 901 |
adrenal gland | 93% | 7389.63 | 240 / 258 | 16% | 6.27 | 37 / 230 |
stomach | 37% | 1902.70 | 134 / 359 | 71% | 38.40 | 203 / 286 |
uterus | 65% | 3546.45 | 110 / 170 | 42% | 29.11 | 194 / 459 |
blood vessel | 100% | 45375.11 | 1331 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 9% | 361.49 | 29 / 328 | 88% | 94.88 | 157 / 178 |
adipose | 95% | 10095.51 | 1139 / 1204 | 0% | 0 | 0 / 0 |
spleen | 86% | 5728.94 | 207 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 81% | 13871.36 | 752 / 929 | 0% | 0 | 0 / 0 |
heart | 76% | 8556.72 | 655 / 861 | 0% | 0 | 0 / 0 |
thymus | 53% | 2525.47 | 344 / 653 | 19% | 7.02 | 115 / 605 |
prostate | 41% | 2279.07 | 100 / 245 | 19% | 4.87 | 95 / 502 |
ovary | 12% | 490.86 | 21 / 180 | 40% | 16.76 | 174 / 430 |
tonsil | 0% | 0 | 0 / 0 | 36% | 15.85 | 16 / 45 |
liver | 6% | 268.84 | 14 / 226 | 16% | 7.69 | 65 / 406 |
lymph node | 0% | 0 | 0 / 0 | 21% | 4.29 | 6 / 29 |
muscle | 9% | 381.67 | 72 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0002052 | Biological process | positive regulation of neuroblast proliferation |
GO_0001649 | Biological process | osteoblast differentiation |
GO_0010001 | Biological process | glial cell differentiation |
GO_0007155 | Biological process | cell adhesion |
GO_0008037 | Biological process | cell recognition |
GO_0007417 | Biological process | central nervous system development |
GO_0001501 | Biological process | skeletal system development |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0016020 | Cellular component | membrane |
GO_0005796 | Cellular component | Golgi lumen |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0045202 | Cellular component | synapse |
GO_0033165 | Cellular component | interphotoreceptor matrix |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0072534 | Cellular component | perineuronal net |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0030021 | Molecular function | extracellular matrix structural constituent conferring compression resistance |
GO_0005539 | Molecular function | glycosaminoglycan binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
GO_0005540 | Molecular function | hyaluronic acid binding |
Gene name | VCAN |
Protein name | Versican VCAN protein (Versican) Versican core protein Versican core protein (Chondroitin sulfate proteoglycan core protein 2) (Chondroitin sulfate proteoglycan 2) (Glial hyaluronate-binding protein) (GHAP) (Large fibroblast proteoglycan) (PG-M) Versican core protein (Chondroitin sulfate proteoglycan core protein 2) (Large fibroblast proteoglycan) (PG-M) |
Synonyms | CSPG2 |
Description | FUNCTION: May play a role in intercellular signaling and in connecting cells with the extracellular matrix. May take part in the regulation of cell motility, growth and differentiation. Binds hyaluronic acid. FUNCTION: May play a role in intercellular signaling and in connecting cells with the extracellular matrix. May take part in the regulation of cell motility, growth and differentiation. Binds hyaluronic acid. . |
Accessions | ENST00000265077.8 [P13611-1] ENST00000502527.2 [P13611-4] ENST00000512590.6 ENST00000513984.5 ENST00000343200.9 [P13611-2] Q86W61 ENST00000342785.8 [P13611-3] ENST00000513960.5 A0A1B1PFX2 E9PF17 P13611 D6RGZ6 |