Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 29% ± 13% | |
macrophage | 14 studies | 21% ± 7% | |
classical monocyte | 14 studies | 23% ± 9% | |
non-classical monocyte | 14 studies | 26% ± 12% | |
endothelial cell of lymphatic vessel | 10 studies | 27% ± 6% | |
capillary endothelial cell | 9 studies | 27% ± 10% | |
endothelial cell of artery | 9 studies | 23% ± 6% | |
vein endothelial cell | 9 studies | 23% ± 7% | |
endothelial cell of vascular tree | 9 studies | 23% ± 5% | |
smooth muscle cell | 7 studies | 21% ± 5% | |
fibroblast | 7 studies | 24% ± 11% | |
monocyte | 6 studies | 21% ± 5% | |
pericyte | 6 studies | 23% ± 6% | |
epithelial cell | 6 studies | 33% ± 14% | |
conventional dendritic cell | 5 studies | 29% ± 14% | |
basal cell | 5 studies | 28% ± 13% | |
oligodendrocyte | 5 studies | 22% ± 6% | |
myofibroblast cell | 4 studies | 20% ± 4% | |
myeloid cell | 4 studies | 28% ± 8% | |
ciliated cell | 4 studies | 28% ± 7% | |
connective tissue cell | 4 studies | 17% ± 2% | |
pancreatic A cell | 3 studies | 34% ± 8% | |
type B pancreatic cell | 3 studies | 32% ± 10% | |
glomerular endothelial cell | 3 studies | 19% ± 3% | |
Mueller cell | 3 studies | 23% ± 2% | |
glutamatergic neuron | 3 studies | 24% ± 2% | |
dendritic cell | 3 studies | 32% ± 16% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6372.74 | 1445 / 1445 | 100% | 128.68 | 183 / 183 |
lung | 100% | 7588.58 | 578 / 578 | 100% | 129.93 | 1155 / 1155 |
ovary | 100% | 5695.40 | 180 / 180 | 100% | 107.19 | 430 / 430 |
skin | 100% | 7245.99 | 1809 / 1809 | 100% | 175.74 | 472 / 472 |
stomach | 100% | 4247.21 | 359 / 359 | 100% | 125.27 | 286 / 286 |
uterus | 100% | 6656.78 | 170 / 170 | 100% | 125.81 | 459 / 459 |
brain | 100% | 4903.44 | 2639 / 2642 | 100% | 142.27 | 705 / 705 |
breast | 100% | 7960.14 | 459 / 459 | 100% | 125.22 | 1116 / 1118 |
intestine | 100% | 5764.75 | 966 / 966 | 100% | 127.74 | 526 / 527 |
bladder | 100% | 6398.95 | 21 / 21 | 100% | 129.81 | 503 / 504 |
prostate | 100% | 5541.22 | 245 / 245 | 100% | 99.39 | 501 / 502 |
kidney | 100% | 5498.58 | 89 / 89 | 100% | 131.32 | 899 / 901 |
thymus | 100% | 5319.26 | 652 / 653 | 100% | 141.19 | 604 / 605 |
adrenal gland | 100% | 5997.72 | 258 / 258 | 99% | 135.17 | 227 / 230 |
liver | 96% | 1849.35 | 217 / 226 | 95% | 54.38 | 385 / 406 |
pancreas | 88% | 1605.66 | 288 / 328 | 99% | 130.56 | 177 / 178 |
adipose | 100% | 9396.12 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 9368.50 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 57.93 | 29 / 29 |
spleen | 100% | 4737.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 138.16 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 44.17 | 1 / 1 |
muscle | 100% | 4366.61 | 802 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 114.12 | 79 / 80 |
heart | 98% | 3857.52 | 840 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 4260.66 | 886 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001921 | Biological process | positive regulation of receptor recycling |
GO_0002639 | Biological process | positive regulation of immunoglobulin production |
GO_0017156 | Biological process | calcium-ion regulated exocytosis |
GO_0061025 | Biological process | membrane fusion |
GO_1903531 | Biological process | negative regulation of secretion by cell |
GO_0035493 | Biological process | SNARE complex assembly |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_1903593 | Biological process | regulation of histamine secretion by mast cell |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0006904 | Biological process | vesicle docking involved in exocytosis |
GO_0006887 | Biological process | exocytosis |
GO_0034446 | Biological process | substrate adhesion-dependent cell spreading |
GO_0006906 | Biological process | vesicle fusion |
GO_0070254 | Biological process | mucus secretion |
GO_0043001 | Biological process | Golgi to plasma membrane protein transport |
GO_0071346 | Biological process | cellular response to type II interferon |
GO_0005886 | Cellular component | plasma membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0055037 | Cellular component | recycling endosome |
GO_0031901 | Cellular component | early endosome membrane |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0030669 | Cellular component | clathrin-coated endocytic vesicle membrane |
GO_0043005 | Cellular component | neuron projection |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0009986 | Cellular component | cell surface |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0030133 | Cellular component | transport vesicle |
GO_0030670 | Cellular component | phagocytic vesicle membrane |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0030141 | Cellular component | secretory granule |
GO_0031201 | Cellular component | SNARE complex |
GO_0017075 | Molecular function | syntaxin-1 binding |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | VAMP3 |
Protein name | Vesicle-associated membrane protein 3 (VAMP-3) (Cellubrevin) (CEB) (Synaptobrevin-3) Vesicle-associated membrane protein 3 (Synaptobrevin-3) |
Synonyms | SYB3 hCG_21813 |
Description | FUNCTION: SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network. . FUNCTION: SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network. . FUNCTION: SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network. . |
Accessions | ENST00000054666.11 Q15836 ENST00000470357.1 K7EKX0 Q6FGG2 |