Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 24 studies | 44% ± 15% | |
endothelial cell | 18 studies | 32% ± 13% | |
microglial cell | 13 studies | 44% ± 17% | |
mast cell | 11 studies | 26% ± 9% | |
macrophage | 10 studies | 28% ± 18% | |
smooth muscle cell | 9 studies | 26% ± 9% | |
epithelial cell | 9 studies | 38% ± 24% | |
adipocyte | 9 studies | 55% ± 20% | |
pericyte | 8 studies | 26% ± 11% | |
basal cell | 8 studies | 30% ± 15% | |
astrocyte | 8 studies | 39% ± 16% | |
kidney loop of Henle epithelial cell | 6 studies | 35% ± 20% | |
dendritic cell | 6 studies | 26% ± 5% | |
myeloid cell | 6 studies | 25% ± 5% | |
secretory cell | 6 studies | 26% ± 12% | |
adventitial cell | 5 studies | 33% ± 15% | |
cardiac muscle cell | 5 studies | 52% ± 12% | |
club cell | 5 studies | 22% ± 8% | |
type II pneumocyte | 5 studies | 26% ± 7% | |
squamous epithelial cell | 4 studies | 36% ± 19% | |
myofibroblast cell | 4 studies | 32% ± 14% | |
mesothelial cell | 4 studies | 31% ± 10% | |
ciliated cell | 4 studies | 34% ± 24% | |
GABAergic neuron | 4 studies | 39% ± 12% | |
goblet cell | 4 studies | 36% ± 23% | |
endothelial cell of lymphatic vessel | 4 studies | 23% ± 6% | |
type I pneumocyte | 4 studies | 22% ± 5% | |
hepatic stellate cell | 3 studies | 33% ± 6% | |
renal alpha-intercalated cell | 3 studies | 31% ± 5% | |
lymphocyte | 3 studies | 28% ± 3% | |
respiratory goblet cell | 3 studies | 22% ± 4% | |
hepatocyte | 3 studies | 31% ± 14% | |
conventional dendritic cell | 3 studies | 32% ± 12% | |
glutamatergic neuron | 3 studies | 55% ± 4% | |
ependymal cell | 3 studies | 28% ± 12% | |
Schwann cell | 3 studies | 45% ± 19% | |
oligodendrocyte | 3 studies | 21% ± 7% | |
myoepithelial cell | 3 studies | 23% ± 2% | |
abnormal cell | 3 studies | 23% ± 10% | |
mucus secreting cell | 3 studies | 23% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 9893.59 | 577 / 578 | 100% | 10.70 | 1152 / 1155 |
esophagus | 99% | 5105.09 | 1432 / 1445 | 100% | 15.29 | 183 / 183 |
stomach | 100% | 3938.83 | 359 / 359 | 98% | 12.02 | 280 / 286 |
breast | 100% | 7865.56 | 459 / 459 | 97% | 13.16 | 1089 / 1118 |
bladder | 100% | 3543.86 | 21 / 21 | 96% | 9.63 | 486 / 504 |
pancreas | 98% | 2499.97 | 320 / 328 | 98% | 11.83 | 175 / 178 |
intestine | 97% | 3708.75 | 934 / 966 | 98% | 12.93 | 518 / 527 |
ovary | 96% | 2249.09 | 173 / 180 | 99% | 18.15 | 425 / 430 |
kidney | 97% | 3087.13 | 86 / 89 | 96% | 9.56 | 868 / 901 |
thymus | 98% | 3915.04 | 642 / 653 | 93% | 5.91 | 565 / 605 |
prostate | 96% | 3243.36 | 234 / 245 | 96% | 8.54 | 480 / 502 |
uterus | 99% | 3622.95 | 169 / 170 | 91% | 7.59 | 417 / 459 |
skin | 99% | 5698.57 | 1794 / 1809 | 83% | 12.08 | 392 / 472 |
adrenal gland | 97% | 3147.91 | 249 / 258 | 60% | 2.96 | 137 / 230 |
brain | 48% | 800.78 | 1263 / 2642 | 95% | 6.89 | 670 / 705 |
muscle | 100% | 6396.34 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.79 | 1 / 1 |
adipose | 100% | 7862.43 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6415.56 | 1333 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 8.29 | 43 / 45 |
heart | 89% | 3545.47 | 763 / 861 | 0% | 0 | 0 / 0 |
spleen | 73% | 1973.74 | 176 / 241 | 0% | 0 | 0 / 0 |
liver | 24% | 339.41 | 55 / 226 | 45% | 2.01 | 184 / 406 |
lymph node | 0% | 0 | 0 / 0 | 38% | 1.94 | 11 / 29 |
eye | 0% | 0 | 0 / 0 | 20% | 0.67 | 16 / 80 |
peripheral blood | 1% | 16.80 | 12 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007605 | Biological process | sensory perception of sound |
GO_0010996 | Biological process | response to auditory stimulus |
GO_0001508 | Biological process | action potential |
GO_1905584 | Biological process | outer hair cell apoptotic process |
GO_0008150 | Biological process | biological_process |
GO_1904019 | Biological process | epithelial cell apoptotic process |
GO_0005911 | Cellular component | cell-cell junction |
GO_0005575 | Cellular component | cellular_component |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005515 | Molecular function | protein binding |
GO_0004843 | Molecular function | cysteine-type deubiquitinase activity |
Gene name | USP53 |
Protein name | Alternative protein USP53 Ubiquitin specific peptidase 53 Inactive ubiquitin carboxyl-terminal hydrolase 53 (Inactive ubiquitin-specific peptidase 53) |
Synonyms | KIAA1350 |
Description | FUNCTION: Tight junction-associated protein that is involved in the survival of auditory hair cells and hearing. Maybe by modulating the barrier properties and mechanical stability of tight junctions. Has no peptidase activity . . |
Accessions | A0A8I5KT61 ENST00000274030.11 Q70EK8 A0A8J9FKG6 L8E8X6 H0Y8Q1 ENST00000692078.1 ENST00000450251.6 ENST00000509769.5 ENST00000688980.1 ENST00000507906.5 D6RF54 |