Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of lymphatic vessel | 7 studies | 30% ± 13% | |
GABAergic neuron | 6 studies | 40% ± 20% | |
endothelial cell | 5 studies | 40% ± 13% | |
cardiac muscle cell | 5 studies | 41% ± 11% | |
type II pneumocyte | 5 studies | 26% ± 6% | |
oligodendrocyte | 5 studies | 27% ± 11% | |
deuterosomal cell | 4 studies | 23% ± 7% | |
glutamatergic neuron | 4 studies | 49% ± 16% | |
oligodendrocyte precursor cell | 4 studies | 30% ± 9% | |
astrocyte | 4 studies | 28% ± 13% | |
GABAergic interneuron | 3 studies | 21% ± 3% | |
interneuron | 3 studies | 56% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2337.00 | 458 / 459 | 99% | 16.02 | 1110 / 1118 |
thymus | 100% | 2430.46 | 653 / 653 | 99% | 19.76 | 599 / 605 |
prostate | 99% | 1127.03 | 242 / 245 | 100% | 12.32 | 501 / 502 |
adrenal gland | 100% | 4842.57 | 258 / 258 | 95% | 9.02 | 218 / 230 |
lung | 99% | 1749.14 | 573 / 578 | 94% | 12.63 | 1088 / 1155 |
brain | 90% | 897.45 | 2384 / 2642 | 100% | 11.48 | 705 / 705 |
skin | 94% | 1256.04 | 1708 / 1809 | 95% | 16.56 | 449 / 472 |
uterus | 100% | 1668.58 | 170 / 170 | 85% | 9.78 | 391 / 459 |
ovary | 100% | 2318.83 | 180 / 180 | 82% | 6.14 | 351 / 430 |
esophagus | 88% | 894.72 | 1276 / 1445 | 88% | 9.58 | 161 / 183 |
bladder | 95% | 1202.29 | 20 / 21 | 74% | 5.94 | 371 / 504 |
intestine | 87% | 967.23 | 838 / 966 | 78% | 5.37 | 410 / 527 |
liver | 77% | 569.25 | 173 / 226 | 83% | 5.91 | 336 / 406 |
kidney | 82% | 721.69 | 73 / 89 | 75% | 5.67 | 674 / 901 |
pancreas | 71% | 475.77 | 232 / 328 | 86% | 5.48 | 153 / 178 |
stomach | 53% | 469.29 | 192 / 359 | 79% | 6.16 | 227 / 286 |
adipose | 100% | 2533.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 34532.04 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.46 | 1 / 1 |
blood vessel | 99% | 1485.81 | 1324 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 6622.95 | 843 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 9.42 | 27 / 29 |
spleen | 90% | 620.37 | 217 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 9.50 | 40 / 45 |
eye | 0% | 0 | 0 / 0 | 75% | 4.94 | 60 / 80 |
peripheral blood | 19% | 302.69 | 179 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008283 | Biological process | cell population proliferation |
GO_0035523 | Biological process | protein K29-linked deubiquitination |
GO_0044313 | Biological process | protein K6-linked deubiquitination |
GO_0070536 | Biological process | protein K63-linked deubiquitination |
GO_0030318 | Biological process | melanocyte differentiation |
GO_0010506 | Biological process | regulation of autophagy |
GO_0050821 | Biological process | protein stabilization |
GO_0006508 | Biological process | proteolysis |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0016579 | Biological process | protein deubiquitination |
GO_0006914 | Biological process | autophagy |
GO_1904294 | Biological process | positive regulation of ERAD pathway |
GO_0036506 | Biological process | maintenance of unfolded protein |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_1904288 | Molecular function | BAT3 complex binding |
GO_0070628 | Molecular function | proteasome binding |
GO_0004843 | Molecular function | cysteine-type deubiquitinase activity |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_1990380 | Molecular function | K48-linked deubiquitinase activity |
GO_0004197 | Molecular function | cysteine-type endopeptidase activity |
GO_0005515 | Molecular function | protein binding |
GO_0043130 | Molecular function | ubiquitin binding |
GO_0044389 | Molecular function | ubiquitin-like protein ligase binding |
Gene name | USP13 |
Protein name | Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.4.19.12) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12) Ubiquitin specific peptidase 13 |
Synonyms | ISOT3 |
Description | FUNCTION: Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy, endoplasmic reticulum-associated degradation (ERAD), cell cycle progression or DNA damage response . Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Alternatively, forms with NEDD4 a deubiquitination complex, which subsequently stabilizes VPS34 to promote autophagy . Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Also regulates ERAD through the deubiquitination of UBL4A a component of the BAG6/BAT3 complex. Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Regulates the cell cycle progression by stabilizing cell cycle proteins such as SKP2 and AURKB . In addition, plays an important role in maintaining genomic stability and in DNA replication checkpoint activation via regulation of RAP80 and TOPBP1 . Deubiquitinates the multifunctional protein HMGB1 and subsequently drives its nucleocytoplasmic localization and its secretion . Positively regulates type I and type II interferon signalings by deubiquitinating STAT1 but negatively regulates antiviral response by deubiquitinating STING1 . . FUNCTION: Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. . |
Accessions | A0A7P0T9H6 ENST00000680605.1 A0A7P0T849 A0A7P0TBD6 A0A7P0TAC6 ENST00000680276.1 ENST00000681736.1 A0A7P0T9N7 A0A7P0T8G3 A0A7P0TB18 ENST00000679772.1 A0A7P0TAJ4 ENST00000680905.1 ENST00000681128.1 ENST00000681362.1 A0A7P0TBA7 ENST00000680055.1 ENST00000680217.1 ENST00000680734.1 ENST00000496897.5 [Q92995-2] A0A7P0Z4P4 A0A7P0TAP9 ENST00000680436.1 ENST00000681262.1 A0A7P0T863 ENST00000681642.1 ENST00000497380.1 ENST00000680031.1 A0A7P0Z460 A0A7P0T873 ENST00000681358.1 ENST00000679660.1 A0A7P0T979 ENST00000681649.1 ENST00000681098.1 ENST00000679954.1 ENST00000681560.1 A0A7P0T859 A0A7P0T8S4 ENST00000679839.1 ENST00000680008.1 ENST00000680307.1 A0A7P0T9S5 H7C502 ENST00000679749.1 A0A7P0TAV8 A0A7P0TB92 A0A7P0TAU4 ENST00000680549.1 ENST00000681918.1 H7C5J3 ENST00000681109.1 A0A7P0T9Q1 ENST00000680853.1 ENST00000680167.1 A0A7P0T9F2 A0A7P0Z4J7 ENST00000602704.2 ENST00000679674.1 A0A7P0Z4C0 ENST00000497155.1 A0A7P0T8Y7 ENST00000679694.1 A0A7P0TB48 A0A7P0TAN6 A0A7P0TBG5 ENST00000679768.1 ENST00000681630.1 ENST00000680477.1 ENST00000681299.1 A0A7P0T9V0 ENST00000679893.1 A0A7P0T9J2 Q92995 ENST00000680951.1 A0A7P0TB82 A0A7P0TA96 ENST00000679769.1 ENST00000680587.1 ENST00000681051.1 ENST00000681783.1 ENST00000679407.1 ENST00000679783.1 A0A7P0TA93 A0A7P0Z4R3 ENST00000679350.1 A0A7P0TB69 ENST00000680843.1 A0A7P0Z4M1 ENST00000680308.1 A0A7P0TBN7 A0A7P0TAM7 A0A7P0Z496 ENST00000680502.1 A0A7P0T8B2 ENST00000680651.1 A0A7P0T9X0 ENST00000263966.8 [Q92995-1] A0A7P0TAJ9 A0A7P0T949 ENST00000681064.1 |