USP13 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

GO_0008283Biological processcell population proliferation
GO_0035523Biological processprotein K29-linked deubiquitination
GO_0044313Biological processprotein K6-linked deubiquitination
GO_0070536Biological processprotein K63-linked deubiquitination
GO_0030318Biological processmelanocyte differentiation
GO_0010506Biological processregulation of autophagy
GO_0050821Biological processprotein stabilization
GO_0006508Biological processproteolysis
GO_0006355Biological processregulation of DNA-templated transcription
GO_0016579Biological processprotein deubiquitination
GO_0006914Biological processautophagy
GO_1904294Biological processpositive regulation of ERAD pathway
GO_0036506Biological processmaintenance of unfolded protein
GO_0005634Cellular componentnucleus
GO_0005654Cellular componentnucleoplasm
GO_0005829Cellular componentcytosol
GO_1904288Molecular functionBAT3 complex binding
GO_0070628Molecular functionproteasome binding
GO_0004843Molecular functioncysteine-type deubiquitinase activity
GO_0031625Molecular functionubiquitin protein ligase binding
GO_0051087Molecular functionprotein-folding chaperone binding
GO_0008270Molecular functionzinc ion binding
GO_1990380Molecular functionK48-linked deubiquitinase activity
GO_0004197Molecular functioncysteine-type endopeptidase activity
GO_0005515Molecular functionprotein binding
GO_0043130Molecular functionubiquitin binding
GO_0044389Molecular functionubiquitin-like protein ligase binding

IV. Literature review

[source]
Gene nameUSP13
Protein nameUbiquitin carboxyl-terminal hydrolase 13 (EC 3.4.19.12) (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3) (Ubiquitin thioesterase 13) (Ubiquitin-specific-processing protease 13)
Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)
Ubiquitin specific peptidase 13
SynonymsISOT3
DescriptionFUNCTION: Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy, endoplasmic reticulum-associated degradation (ERAD), cell cycle progression or DNA damage response . Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Alternatively, forms with NEDD4 a deubiquitination complex, which subsequently stabilizes VPS34 to promote autophagy . Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Also regulates ERAD through the deubiquitination of UBL4A a component of the BAG6/BAT3 complex. Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Regulates the cell cycle progression by stabilizing cell cycle proteins such as SKP2 and AURKB . In addition, plays an important role in maintaining genomic stability and in DNA replication checkpoint activation via regulation of RAP80 and TOPBP1 . Deubiquitinates the multifunctional protein HMGB1 and subsequently drives its nucleocytoplasmic localization and its secretion . Positively regulates type I and type II interferon signalings by deubiquitinating STAT1 but negatively regulates antiviral response by deubiquitinating STING1 . .

FUNCTION: Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. .

AccessionsA0A7P0T9H6
ENST00000680605.1
A0A7P0T849
A0A7P0TBD6
A0A7P0TAC6
ENST00000680276.1
ENST00000681736.1
A0A7P0T9N7
A0A7P0T8G3
A0A7P0TB18
ENST00000679772.1
A0A7P0TAJ4
ENST00000680905.1
ENST00000681128.1
ENST00000681362.1
A0A7P0TBA7
ENST00000680055.1
ENST00000680217.1
ENST00000680734.1
ENST00000496897.5 [Q92995-2]
A0A7P0Z4P4
A0A7P0TAP9
ENST00000680436.1
ENST00000681262.1
A0A7P0T863
ENST00000681642.1
ENST00000497380.1
ENST00000680031.1
A0A7P0Z460
A0A7P0T873
ENST00000681358.1
ENST00000679660.1
A0A7P0T979
ENST00000681649.1
ENST00000681098.1
ENST00000679954.1
ENST00000681560.1
A0A7P0T859
A0A7P0T8S4
ENST00000679839.1
ENST00000680008.1
ENST00000680307.1
A0A7P0T9S5
H7C502
ENST00000679749.1
A0A7P0TAV8
A0A7P0TB92
A0A7P0TAU4
ENST00000680549.1
ENST00000681918.1
H7C5J3
ENST00000681109.1
A0A7P0T9Q1
ENST00000680853.1
ENST00000680167.1
A0A7P0T9F2
A0A7P0Z4J7
ENST00000602704.2
ENST00000679674.1
A0A7P0Z4C0
ENST00000497155.1
A0A7P0T8Y7
ENST00000679694.1
A0A7P0TB48
A0A7P0TAN6
A0A7P0TBG5
ENST00000679768.1
ENST00000681630.1
ENST00000680477.1
ENST00000681299.1
A0A7P0T9V0
ENST00000679893.1
A0A7P0T9J2
Q92995
ENST00000680951.1
A0A7P0TB82
A0A7P0TA96
ENST00000679769.1
ENST00000680587.1
ENST00000681051.1
ENST00000681783.1
ENST00000679407.1
ENST00000679783.1
A0A7P0TA93
A0A7P0Z4R3
ENST00000679350.1
A0A7P0TB69
ENST00000680843.1
A0A7P0Z4M1
ENST00000680308.1
A0A7P0TBN7
A0A7P0TAM7
A0A7P0Z496
ENST00000680502.1
A0A7P0T8B2
ENST00000680651.1
A0A7P0T9X0
ENST00000263966.8 [Q92995-1]
A0A7P0TAJ9
A0A7P0T949
ENST00000681064.1