Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 17 studies | 30% ± 15% | |
oligodendrocyte | 15 studies | 55% ± 16% | |
oligodendrocyte precursor cell | 12 studies | 38% ± 15% | |
glutamatergic neuron | 11 studies | 45% ± 24% | |
astrocyte | 11 studies | 30% ± 14% | |
GABAergic neuron | 9 studies | 46% ± 23% | |
adipocyte | 9 studies | 41% ± 6% | |
microglial cell | 8 studies | 31% ± 9% | |
neuron | 7 studies | 46% ± 19% | |
macrophage | 7 studies | 27% ± 11% | |
amacrine cell | 7 studies | 35% ± 11% | |
retinal cone cell | 7 studies | 56% ± 10% | |
fibroblast | 7 studies | 26% ± 8% | |
epithelial cell | 6 studies | 41% ± 20% | |
interneuron | 6 studies | 48% ± 20% | |
retina horizontal cell | 6 studies | 42% ± 9% | |
retinal rod cell | 6 studies | 25% ± 9% | |
type II pneumocyte | 6 studies | 28% ± 11% | |
B cell | 5 studies | 21% ± 6% | |
retinal ganglion cell | 5 studies | 24% ± 2% | |
ciliated cell | 5 studies | 31% ± 10% | |
myeloid cell | 5 studies | 19% ± 3% | |
basal cell | 5 studies | 30% ± 16% | |
regulatory T cell | 5 studies | 22% ± 7% | |
club cell | 5 studies | 27% ± 11% | |
granule cell | 4 studies | 36% ± 4% | |
pericyte | 4 studies | 31% ± 14% | |
retinal bipolar neuron | 4 studies | 20% ± 2% | |
endothelial cell of vascular tree | 4 studies | 21% ± 4% | |
endothelial cell of lymphatic vessel | 4 studies | 22% ± 9% | |
respiratory goblet cell | 4 studies | 28% ± 10% | |
T cell | 4 studies | 18% ± 5% | |
GABAergic interneuron | 3 studies | 32% ± 15% | |
glial cell | 3 studies | 22% ± 5% | |
plasma cell | 3 studies | 25% ± 7% | |
retinal pigment epithelial cell | 3 studies | 27% ± 7% | |
lymphocyte | 3 studies | 22% ± 4% | |
GABAergic amacrine cell | 3 studies | 32% ± 4% | |
OFF-bipolar cell | 3 studies | 24% ± 3% | |
ON-bipolar cell | 3 studies | 20% ± 2% | |
glycinergic amacrine cell | 3 studies | 21% ± 4% | |
rod bipolar cell | 3 studies | 19% ± 3% | |
hepatocyte | 3 studies | 33% ± 22% | |
alveolar macrophage | 3 studies | 38% ± 14% | |
smooth muscle cell | 3 studies | 23% ± 6% | |
type I pneumocyte | 3 studies | 23% ± 5% | |
transit amplifying cell | 3 studies | 36% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1443.83 | 1444 / 1445 | 100% | 19.36 | 183 / 183 |
breast | 100% | 1639.56 | 459 / 459 | 100% | 21.45 | 1115 / 1118 |
prostate | 100% | 1471.69 | 245 / 245 | 99% | 11.56 | 499 / 502 |
skin | 100% | 2912.53 | 1808 / 1809 | 99% | 18.38 | 469 / 472 |
thymus | 100% | 2161.21 | 653 / 653 | 99% | 11.93 | 597 / 605 |
stomach | 100% | 1239.84 | 359 / 359 | 99% | 13.37 | 282 / 286 |
intestine | 100% | 1547.76 | 966 / 966 | 98% | 10.22 | 518 / 527 |
bladder | 100% | 1381.90 | 21 / 21 | 98% | 9.66 | 494 / 504 |
brain | 100% | 4043.96 | 2642 / 2642 | 98% | 12.51 | 689 / 705 |
lung | 100% | 1660.01 | 576 / 578 | 98% | 12.48 | 1132 / 1155 |
uterus | 100% | 1698.36 | 170 / 170 | 97% | 10.17 | 445 / 459 |
pancreas | 98% | 899.75 | 320 / 328 | 97% | 8.30 | 173 / 178 |
kidney | 100% | 1412.44 | 89 / 89 | 93% | 7.92 | 837 / 901 |
ovary | 100% | 1430.74 | 180 / 180 | 89% | 7.64 | 384 / 430 |
adrenal gland | 100% | 1154.14 | 257 / 258 | 89% | 10.20 | 205 / 230 |
liver | 91% | 682.93 | 206 / 226 | 60% | 3.56 | 245 / 406 |
adipose | 100% | 1456.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2103.39 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1540.19 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 10.76 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.98 | 1 / 1 |
blood vessel | 100% | 1355.81 | 1332 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 6.62 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 96% | 15.40 | 77 / 80 |
heart | 91% | 899.00 | 783 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 37% | 549.51 | 341 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
Gene name | TULP4 |
Protein name | Tubby-related protein 4 (Tubby superfamily protein) (Tubby-like protein 4) TUB like protein 4 |
Synonyms | TUSP KIAA1397 TUBL4 |
Description | FUNCTION: May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. . |
Accessions | Q9NRJ4 ENST00000367094.6 [Q9NRJ4-2] ENST00000613390.1 ENST00000367097.8 [Q9NRJ4-1] A0A087WYH3 |