Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 36 studies | 35% ± 15% | |
endothelial cell | 32 studies | 34% ± 14% | |
macrophage | 22 studies | 28% ± 13% | |
endothelial cell of lymphatic vessel | 22 studies | 46% ± 17% | |
pericyte | 17 studies | 25% ± 10% | |
capillary endothelial cell | 12 studies | 32% ± 7% | |
connective tissue cell | 11 studies | 34% ± 8% | |
vein endothelial cell | 11 studies | 29% ± 7% | |
type I pneumocyte | 10 studies | 36% ± 12% | |
mesothelial cell | 9 studies | 38% ± 17% | |
myofibroblast cell | 9 studies | 28% ± 12% | |
mast cell | 7 studies | 21% ± 9% | |
endothelial cell of vascular tree | 7 studies | 34% ± 8% | |
type II pneumocyte | 6 studies | 28% ± 12% | |
endothelial cell of artery | 5 studies | 22% ± 4% | |
smooth muscle cell | 5 studies | 24% ± 6% | |
myeloid cell | 5 studies | 27% ± 8% | |
basal cell | 5 studies | 23% ± 10% | |
glomerular endothelial cell | 4 studies | 44% ± 10% | |
adventitial cell | 4 studies | 35% ± 17% | |
epithelial cell | 4 studies | 29% ± 14% | |
dendritic cell | 4 studies | 26% ± 5% | |
classical monocyte | 3 studies | 24% ± 4% | |
conventional dendritic cell | 3 studies | 28% ± 4% | |
abnormal cell | 3 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5572.08 | 653 / 653 | 100% | 54.90 | 605 / 605 |
skin | 100% | 4517.71 | 1809 / 1809 | 100% | 77.57 | 470 / 472 |
ovary | 100% | 5503.29 | 180 / 180 | 96% | 21.59 | 414 / 430 |
breast | 100% | 6220.99 | 459 / 459 | 96% | 25.15 | 1071 / 1118 |
kidney | 100% | 3480.37 | 89 / 89 | 95% | 51.36 | 855 / 901 |
prostate | 100% | 3379.05 | 244 / 245 | 90% | 14.38 | 450 / 502 |
lung | 100% | 6159.20 | 578 / 578 | 87% | 23.72 | 1008 / 1155 |
uterus | 100% | 5481.46 | 170 / 170 | 83% | 20.99 | 381 / 459 |
pancreas | 85% | 1080.41 | 280 / 328 | 94% | 26.70 | 167 / 178 |
liver | 77% | 1161.03 | 174 / 226 | 94% | 27.35 | 381 / 406 |
bladder | 100% | 3951.81 | 21 / 21 | 70% | 14.07 | 354 / 504 |
adrenal gland | 99% | 2166.37 | 255 / 258 | 67% | 13.50 | 155 / 230 |
intestine | 99% | 2950.99 | 958 / 966 | 65% | 10.40 | 341 / 527 |
stomach | 81% | 1758.39 | 290 / 359 | 71% | 10.94 | 203 / 286 |
esophagus | 94% | 3190.46 | 1360 / 1445 | 52% | 6.61 | 96 / 183 |
brain | 43% | 593.56 | 1149 / 2642 | 82% | 12.47 | 579 / 705 |
adipose | 100% | 7579.04 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 130.49 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 36.97 | 29 / 29 |
spleen | 100% | 5462.83 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.43 | 1 / 1 |
blood vessel | 99% | 2892.79 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 2160.33 | 849 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 13.83 | 38 / 45 |
muscle | 63% | 734.46 | 508 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 14% | 157.10 | 134 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0031982 | Cellular component | vesicle |
GO_0005886 | Cellular component | plasma membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0003823 | Molecular function | antigen binding |
GO_0005515 | Molecular function | protein binding |
GO_0005178 | Molecular function | integrin binding |
Gene name | TSPAN4 |
Protein name | Tetraspanin 4 Tetraspanin-4 (Tspan-4) (Novel antigen 2) (NAG-2) (Transmembrane 4 superfamily member 7) Tetraspanin |
Synonyms | NAG2 TM4SF7 |
Description | |
Accessions | ENST00000397397.7 E9PN41 ENST00000397408.5 J3KNL1 E9PSH3 ENST00000346501.8 ENST00000397406.5 ENST00000409543.6 ENST00000527644.2 ENST00000525334.5 ENST00000530404.5 ENST00000525201.5 O14817 ENST00000397404.5 E9PMX4 ENST00000409531.5 ENST00000532375.5 ENST00000397396.5 E9PPX8 ENST00000397411.6 A8MVV6 J3KQ42 |