Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| basal cell | 15 studies | 34% ± 15% | |
| ciliated cell | 9 studies | 28% ± 7% | |
| epithelial cell | 6 studies | 42% ± 22% | |
| keratinocyte | 5 studies | 52% ± 17% | |
| secretory cell | 4 studies | 30% ± 4% | |
| squamous epithelial cell | 4 studies | 59% ± 20% | |
| hillock cell | 3 studies | 40% ± 6% | |
| respiratory goblet cell | 3 studies | 25% ± 5% | |
| club cell | 3 studies | 22% ± 9% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| lung | 3 studies | 30% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 38% | 47077.01 | 556 / 1445 | 82% | 200.83 | 150 / 183 |
| prostate | 56% | 8654.25 | 136 / 245 | 49% | 19.68 | 248 / 502 |
| bladder | 29% | 3672.86 | 6 / 21 | 76% | 95.84 | 382 / 504 |
| ureter | 0% | 0 | 0 / 0 | 100% | 19.68 | 1 / 1 |
| tonsil | 0% | 0 | 0 / 0 | 98% | 224.27 | 44 / 45 |
| skin | 72% | 93331.29 | 1303 / 1809 | 10% | 13.04 | 47 / 472 |
| pancreas | 0% | 0 | 0 / 328 | 77% | 70.63 | 137 / 178 |
| uterus | 1% | 1112.66 | 2 / 170 | 73% | 158.70 | 336 / 459 |
| intestine | 0% | 0 | 0 / 966 | 60% | 36.73 | 318 / 527 |
| ovary | 0% | 0 | 0 / 180 | 55% | 31.92 | 238 / 430 |
| breast | 21% | 2640.02 | 98 / 459 | 32% | 18.07 | 363 / 1118 |
| lung | 0% | 0 | 0 / 578 | 53% | 86.49 | 615 / 1155 |
| stomach | 1% | 108.27 | 2 / 359 | 42% | 22.45 | 120 / 286 |
| thymus | 0% | 0 | 0 / 653 | 26% | 16.39 | 159 / 605 |
| liver | 0% | 0 | 0 / 226 | 2% | 1.04 | 9 / 406 |
| kidney | 0% | 0 | 0 / 89 | 2% | 1.14 | 19 / 901 |
| adipose | 1% | 122.08 | 7 / 1204 | 0% | 0 | 0 / 0 |
| adrenal gland | 0% | 0 | 0 / 258 | 0% | 0.26 | 1 / 230 |
| muscle | 0% | 37.26 | 2 / 803 | 0% | 0 | 0 / 0 |
| brain | 0% | 0 | 0 / 2642 | 0% | 0.02 | 1 / 705 |
| peripheral blood | 0% | 13.54 | 1 / 929 | 0% | 0 | 0 / 0 |
| blood vessel | 0% | 50.50 | 1 / 1335 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
| GO_1900181 | Biological process | negative regulation of protein localization to nucleus |
| GO_0098609 | Biological process | cell-cell adhesion |
| GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
| GO_0045087 | Biological process | innate immune response |
| GO_0005764 | Cellular component | lysosome |
| GO_0005912 | Cellular component | adherens junction |
| GO_0098641 | Molecular function | cadherin binding involved in cell-cell adhesion |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0008270 | Molecular function | zinc ion binding |
| GO_0002039 | Molecular function | p53 binding |
| Gene name | TRIM29 |
| Protein name | Tripartite motif containing 29 Tripartite motif-containing protein 29 (Ataxia telangiectasia group D-associated protein) TRIM29 protein |
| Synonyms | ATDC |
| Description | FUNCTION: Plays a crucial role in the regulation of macrophage activation in response to viral or bacterial infections within the respiratory tract. Mechanistically, TRIM29 interacts with IKBKG/NEMO in the lysosome where it induces its 'Lys-48' ubiquitination and subsequent degradation. In turn, the expression of type I interferons and the production of pro-inflammatory cytokines are inhibited. Additionally, induces the 'Lys-48' ubiquitination of STING1 in a similar way, leading to its degradation. . |
| Accessions | H0YD78 E9PIQ2 E9PRL4 ENST00000532833.1 ENST00000475051.4 ENST00000529011.1 H0YF27 ENST00000533302.5 E9PJ94 ENST00000341846.10 [Q14134-1] ENST00000529040.1 ENST00000531555.5 Q0P6H7 E9PM74 E9PI31 ENST00000627238.1 ENST00000529495.1 E9PPX1 ENST00000526881.1 ENST00000528870.5 E9PJD4 E9PLI4 ENST00000529044.5 Q14134 |
