Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 7 studies | 24% ± 6% | |
ciliated cell | 6 studies | 28% ± 7% | |
connective tissue cell | 4 studies | 26% ± 11% | |
non-classical monocyte | 3 studies | 21% ± 3% | |
endothelial cell | 3 studies | 25% ± 10% | |
epithelial cell | 3 studies | 39% ± 15% | |
dendritic cell | 3 studies | 20% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 25% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 100% | 864.24 | 328 / 328 | 100% | 15.35 | 178 / 178 |
brain | 100% | 626.89 | 2634 / 2642 | 100% | 17.99 | 705 / 705 |
thymus | 100% | 1439.17 | 653 / 653 | 99% | 21.87 | 600 / 605 |
ovary | 100% | 1366.89 | 180 / 180 | 99% | 13.58 | 426 / 430 |
prostate | 100% | 1342.31 | 245 / 245 | 99% | 20.24 | 496 / 502 |
skin | 100% | 1141.62 | 1809 / 1809 | 99% | 18.45 | 466 / 472 |
uterus | 100% | 1168.31 | 170 / 170 | 99% | 19.06 | 453 / 459 |
kidney | 100% | 1620.35 | 89 / 89 | 98% | 16.27 | 887 / 901 |
bladder | 100% | 1089.62 | 21 / 21 | 98% | 15.33 | 492 / 504 |
liver | 100% | 1250.07 | 226 / 226 | 98% | 12.18 | 396 / 406 |
intestine | 100% | 991.33 | 966 / 966 | 98% | 13.70 | 514 / 527 |
lung | 100% | 1093.99 | 578 / 578 | 97% | 14.06 | 1126 / 1155 |
breast | 100% | 1201.68 | 459 / 459 | 97% | 13.35 | 1088 / 1118 |
esophagus | 100% | 796.08 | 1445 / 1445 | 97% | 7.51 | 178 / 183 |
stomach | 100% | 1016.91 | 359 / 359 | 96% | 11.82 | 275 / 286 |
adrenal gland | 100% | 1420.53 | 258 / 258 | 96% | 15.67 | 220 / 230 |
adipose | 100% | 1106.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 22.51 | 80 / 80 |
muscle | 100% | 1388.81 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1173.91 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.43 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.60 | 1 / 1 |
blood vessel | 100% | 886.00 | 1333 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 966.65 | 923 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 1140.87 | 854 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 11.24 | 28 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0007030 | Biological process | Golgi organization |
GO_0006886 | Biological process | intracellular protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0007267 | Biological process | cell-cell signaling |
GO_0045087 | Biological process | innate immune response |
GO_0033116 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005793 | Cellular component | endoplasmic reticulum-Golgi intermediate compartment |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005886 | Cellular component | plasma membrane |
GO_0030134 | Cellular component | COPII-coated ER to Golgi transport vesicle |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0038024 | Molecular function | cargo receptor activity |
GO_0005102 | Molecular function | signaling receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | TMED1 |
Protein name | Transmembrane emp24 domain-containing protein 1 (Interleukin-1 receptor-like 1 ligand) (Putative T1/ST2 receptor-binding protein) (p24 family protein gamma-1) (Tp24) (p24gamma1) Transmembrane p24 trafficking protein 1 Transmembrane emp24 domain-containing protein 1 (p24 family protein gamma-1) |
Synonyms | IL1RL1L IL1RL1LG |
Description | FUNCTION: Potential role in vesicular protein trafficking, mainly in the early secretory pathway. May act as a cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and may be involved in vesicle coat formation at the cytoplasmic side. Plays a positive role in IL-33-mediated IL-8 and IL-6 production by interacting with interleukin-33 receptor IL1RL1 . Also plays a role in the modulation of innate immune signaling through the cGAS-STING pathway by interacting with RNF26 . . |
Accessions | ENST00000214869.7 ENST00000591695.5 ENST00000589638.1 K7ES06 K7EQ63 ENST00000588259.5 Q13445 ENST00000591157.1 ENST00000588289.1 K7EIR1 K7ERK5 K7EIN4 K7ER03 ENST00000586835.1 |