Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 34 studies | 29% ± 11% | |
macrophage | 24 studies | 25% ± 10% | |
fibroblast | 17 studies | 21% ± 5% | |
smooth muscle cell | 12 studies | 19% ± 3% | |
non-classical monocyte | 12 studies | 23% ± 10% | |
capillary endothelial cell | 12 studies | 25% ± 6% | |
endothelial cell of artery | 12 studies | 25% ± 7% | |
monocyte | 11 studies | 24% ± 10% | |
endothelial cell of lymphatic vessel | 11 studies | 26% ± 8% | |
pericyte | 10 studies | 22% ± 4% | |
myeloid cell | 10 studies | 24% ± 7% | |
endothelial cell of vascular tree | 10 studies | 27% ± 13% | |
type I pneumocyte | 9 studies | 30% ± 6% | |
glutamatergic neuron | 9 studies | 38% ± 26% | |
adipocyte | 9 studies | 31% ± 12% | |
dendritic cell | 8 studies | 29% ± 10% | |
microglial cell | 8 studies | 25% ± 8% | |
astrocyte | 8 studies | 25% ± 7% | |
GABAergic neuron | 8 studies | 37% ± 21% | |
oligodendrocyte | 8 studies | 25% ± 8% | |
classical monocyte | 7 studies | 24% ± 9% | |
vein endothelial cell | 7 studies | 30% ± 16% | |
oligodendrocyte precursor cell | 7 studies | 28% ± 10% | |
B cell | 6 studies | 20% ± 3% | |
conventional dendritic cell | 6 studies | 26% ± 14% | |
epithelial cell | 6 studies | 36% ± 16% | |
alveolar macrophage | 6 studies | 29% ± 11% | |
type II pneumocyte | 6 studies | 25% ± 6% | |
retinal cone cell | 5 studies | 30% ± 12% | |
basal cell | 5 studies | 26% ± 8% | |
interneuron | 5 studies | 39% ± 21% | |
neuron | 4 studies | 35% ± 13% | |
myofibroblast cell | 4 studies | 20% ± 2% | |
retinal rod cell | 4 studies | 20% ± 5% | |
mononuclear phagocyte | 4 studies | 25% ± 6% | |
ciliated cell | 4 studies | 23% ± 7% | |
lymphocyte | 4 studies | 21% ± 4% | |
pancreatic A cell | 3 studies | 30% ± 9% | |
GABAergic interneuron | 3 studies | 18% ± 1% | |
naive B cell | 3 studies | 17% ± 2% | |
club cell | 3 studies | 17% ± 2% | |
Schwann cell | 3 studies | 21% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5271.32 | 2642 / 2642 | 100% | 119.19 | 705 / 705 |
esophagus | 100% | 3904.43 | 1445 / 1445 | 100% | 42.26 | 183 / 183 |
lung | 100% | 7763.56 | 578 / 578 | 100% | 49.83 | 1155 / 1155 |
breast | 100% | 5763.40 | 459 / 459 | 100% | 57.98 | 1116 / 1118 |
thymus | 100% | 10181.60 | 653 / 653 | 100% | 124.29 | 603 / 605 |
uterus | 100% | 3944.02 | 170 / 170 | 100% | 42.24 | 457 / 459 |
prostate | 100% | 3600.93 | 244 / 245 | 100% | 54.40 | 501 / 502 |
bladder | 100% | 3945.05 | 21 / 21 | 99% | 41.05 | 499 / 504 |
kidney | 100% | 3189.79 | 89 / 89 | 99% | 53.23 | 889 / 901 |
intestine | 100% | 3775.03 | 966 / 966 | 98% | 39.46 | 517 / 527 |
stomach | 100% | 6854.05 | 359 / 359 | 98% | 39.94 | 279 / 286 |
adrenal gland | 100% | 3484.74 | 258 / 258 | 97% | 42.39 | 224 / 230 |
skin | 100% | 3937.86 | 1809 / 1809 | 97% | 46.68 | 458 / 472 |
ovary | 100% | 2783.77 | 180 / 180 | 97% | 27.19 | 415 / 430 |
pancreas | 94% | 1643.20 | 308 / 328 | 99% | 51.09 | 177 / 178 |
liver | 90% | 1328.72 | 204 / 226 | 89% | 20.28 | 360 / 406 |
adipose | 100% | 6506.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.51 | 29 / 29 |
spleen | 100% | 3661.89 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.60 | 45 / 45 |
blood vessel | 100% | 4509.86 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 95% | 1980.37 | 822 / 861 | 0% | 0 | 0 / 0 |
muscle | 95% | 1789.79 | 765 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 1878.06 | 820 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 23.40 | 69 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000045 | Biological process | autophagosome assembly |
GO_0006886 | Biological process | intracellular protein transport |
GO_0032456 | Biological process | endocytic recycling |
GO_0050821 | Biological process | protein stabilization |
GO_0048278 | Biological process | vesicle docking |
GO_0033344 | Biological process | cholesterol efflux |
GO_0006906 | Biological process | vesicle fusion |
GO_0045121 | Cellular component | membrane raft |
GO_0012505 | Cellular component | endomembrane system |
GO_0055037 | Cellular component | recycling endosome |
GO_0031901 | Cellular component | early endosome membrane |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0098837 | Cellular component | postsynaptic recycling endosome |
GO_0000139 | Cellular component | Golgi membrane |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0045335 | Cellular component | phagocytic vesicle |
GO_0031083 | Cellular component | BLOC-1 complex |
GO_0000407 | Cellular component | phagophore assembly site |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0031982 | Cellular component | vesicle |
GO_0031201 | Cellular component | SNARE complex |
GO_0000149 | Molecular function | SNARE binding |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | STX12 |
Protein name | Syntaxin 12 Syntaxin-12 STX12 protein |
Synonyms | |
Description | FUNCTION: SNARE promoting fusion of transport vesicles with target membranes. Together with SNARE STX6, promotes movement of vesicles from endosomes to the cell membrane, and may therefore function in the endocytic recycling pathway. Through complex formation with GRIP1, GRIA2 and NSG1 controls the intracellular fate of AMPAR and the endosomal sorting of the GRIA2 subunit toward recycling and membrane targeting. . |
Accessions | B1AJQ6 Q6LEU0 Q86Y82 ENST00000373943.9 ENST00000440806.2 |