Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 16 studies | 26% ± 13% | |
endothelial cell | 15 studies | 35% ± 16% | |
smooth muscle cell | 13 studies | 22% ± 5% | |
glutamatergic neuron | 12 studies | 50% ± 22% | |
ciliated cell | 12 studies | 33% ± 12% | |
oligodendrocyte | 10 studies | 29% ± 9% | |
neuron | 9 studies | 43% ± 18% | |
astrocyte | 9 studies | 30% ± 11% | |
epithelial cell | 8 studies | 36% ± 20% | |
oligodendrocyte precursor cell | 8 studies | 30% ± 10% | |
adipocyte | 8 studies | 24% ± 6% | |
GABAergic neuron | 8 studies | 37% ± 16% | |
natural killer cell | 7 studies | 24% ± 8% | |
macrophage | 7 studies | 22% ± 7% | |
pericyte | 7 studies | 29% ± 17% | |
mast cell | 7 studies | 22% ± 5% | |
interneuron | 6 studies | 40% ± 13% | |
microglial cell | 6 studies | 24% ± 11% | |
myofibroblast cell | 6 studies | 23% ± 8% | |
retina horizontal cell | 6 studies | 32% ± 6% | |
endothelial cell of lymphatic vessel | 6 studies | 31% ± 9% | |
CD16-positive, CD56-dim natural killer cell, human | 5 studies | 31% ± 16% | |
retinal bipolar neuron | 5 studies | 34% ± 9% | |
amacrine cell | 5 studies | 35% ± 7% | |
goblet cell | 5 studies | 32% ± 7% | |
abnormal cell | 4 studies | 26% ± 11% | |
granule cell | 4 studies | 34% ± 8% | |
connective tissue cell | 4 studies | 24% ± 5% | |
myeloid cell | 4 studies | 19% ± 4% | |
cardiac muscle cell | 4 studies | 28% ± 6% | |
Mueller cell | 4 studies | 23% ± 9% | |
monocyte | 4 studies | 18% ± 3% | |
basal cell | 4 studies | 30% ± 16% | |
classical monocyte | 3 studies | 21% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
CD8-positive, alpha-beta T cell | 3 studies | 24% ± 8% | |
hematopoietic precursor cell | 3 studies | 27% ± 7% | |
mature NK T cell | 3 studies | 22% ± 4% | |
GABAergic interneuron | 3 studies | 30% ± 14% | |
glial cell | 3 studies | 28% ± 9% | |
retinal ganglion cell | 3 studies | 33% ± 8% | |
lymphocyte | 3 studies | 24% ± 6% | |
GABAergic amacrine cell | 3 studies | 28% ± 1% | |
OFF-bipolar cell | 3 studies | 33% ± 6% | |
ON-bipolar cell | 3 studies | 29% ± 5% | |
glycinergic amacrine cell | 3 studies | 26% ± 5% | |
rod bipolar cell | 3 studies | 47% ± 1% | |
endothelial cell of vascular tree | 3 studies | 21% ± 8% | |
hepatocyte | 3 studies | 50% ± 23% | |
muscle cell | 3 studies | 36% ± 20% | |
ependymal cell | 3 studies | 42% ± 8% | |
hematopoietic stem cell | 3 studies | 37% ± 11% | |
enteroendocrine cell | 3 studies | 37% ± 7% | |
chondrocyte | 3 studies | 29% ± 12% | |
mesothelial cell | 3 studies | 32% ± 6% | |
mucus secreting cell | 3 studies | 21% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 12792.67 | 180 / 180 | 100% | 119.54 | 430 / 430 |
prostate | 100% | 6143.70 | 245 / 245 | 100% | 83.83 | 502 / 502 |
intestine | 100% | 5351.25 | 966 / 966 | 100% | 54.35 | 525 / 527 |
uterus | 100% | 8681.83 | 170 / 170 | 100% | 72.89 | 457 / 459 |
esophagus | 100% | 5339.85 | 1445 / 1445 | 99% | 56.62 | 182 / 183 |
stomach | 100% | 5943.37 | 359 / 359 | 99% | 57.54 | 283 / 286 |
brain | 99% | 8017.64 | 2626 / 2642 | 99% | 62.92 | 701 / 705 |
breast | 100% | 4546.71 | 459 / 459 | 99% | 47.04 | 1104 / 1118 |
thymus | 100% | 3259.58 | 650 / 653 | 99% | 53.83 | 600 / 605 |
adrenal gland | 100% | 4730.08 | 258 / 258 | 99% | 95.28 | 227 / 230 |
bladder | 100% | 4862.71 | 21 / 21 | 97% | 39.08 | 490 / 504 |
lung | 99% | 3811.69 | 574 / 578 | 98% | 40.41 | 1128 / 1155 |
liver | 99% | 3179.58 | 224 / 226 | 97% | 33.99 | 393 / 406 |
skin | 100% | 3984.16 | 1807 / 1809 | 96% | 34.46 | 452 / 472 |
kidney | 100% | 3746.66 | 89 / 89 | 92% | 29.44 | 831 / 901 |
pancreas | 89% | 1604.02 | 293 / 328 | 99% | 48.87 | 176 / 178 |
blood vessel | 100% | 9838.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3519.89 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 59.56 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 25.03 | 1 / 1 |
adipose | 100% | 4406.33 | 1203 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 41.32 | 79 / 80 |
muscle | 96% | 2125.09 | 773 / 803 | 0% | 0 | 0 / 0 |
heart | 94% | 2389.04 | 806 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 72% | 1731.32 | 672 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 69% | 20.78 | 20 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0021547 | Biological process | midbrain-hindbrain boundary initiation |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0002244 | Biological process | hematopoietic progenitor cell differentiation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0021501 | Biological process | prechordal plate formation |
GO_2000744 | Biological process | positive regulation of anterior head development |
GO_0060323 | Biological process | head morphogenesis |
GO_0048382 | Biological process | mesendoderm development |
GO_0065003 | Biological process | protein-containing complex assembly |
GO_0005667 | Cellular component | transcription regulator complex |
GO_0005634 | Cellular component | nucleus |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
GO_0003697 | Molecular function | single-stranded DNA binding |
Gene name | SSBP3 |
Protein name | Single-stranded DNA-binding protein 3 Single stranded DNA binding protein 3 (cDNA FLJ10355 fis, clone NT2RM2001196) Single stranded DNA binding protein 3 Single-stranded DNA-binding protein 3 (Sequence-specific single-stranded-DNA-binding protein) SSBP3 protein |
Synonyms | SSDP1 hCG_2032140 SSDP |
Description | FUNCTION: May be involved in transcription regulation of the alpha 2(I) collagen gene where it binds to the single-stranded polypyrimidine sequences in the promoter region. . |
Accessions | ENST00000444533.5 ENST00000610401 Q5T863 Q9BWW4 ENST00000417664.7 ENST00000357475.9 [Q9BWW4-3] ENST00000525990.1 Q9NW25 ENST00000610401.6 [Q9BWW4-1] E9PK49 Q9BT57 A0A087WVT6 ENST00000371319.8 [Q9BWW4-2] |