Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 20 studies | 50% ± 22% | |
ciliated cell | 17 studies | 35% ± 16% | |
oligodendrocyte precursor cell | 13 studies | 49% ± 20% | |
glutamatergic neuron | 12 studies | 63% ± 23% | |
endothelial cell of lymphatic vessel | 11 studies | 27% ± 11% | |
GABAergic neuron | 11 studies | 59% ± 27% | |
microglial cell | 11 studies | 37% ± 16% | |
oligodendrocyte | 11 studies | 35% ± 13% | |
basal cell | 10 studies | 37% ± 19% | |
neuron | 9 studies | 43% ± 21% | |
amacrine cell | 8 studies | 56% ± 11% | |
retinal cone cell | 8 studies | 39% ± 11% | |
macrophage | 8 studies | 34% ± 12% | |
retinal ganglion cell | 7 studies | 32% ± 13% | |
interneuron | 6 studies | 73% ± 14% | |
retina horizontal cell | 6 studies | 42% ± 8% | |
Mueller cell | 6 studies | 44% ± 16% | |
endothelial cell | 5 studies | 39% ± 22% | |
retinal bipolar neuron | 5 studies | 40% ± 8% | |
epithelial cell | 5 studies | 43% ± 16% | |
club cell | 5 studies | 21% ± 6% | |
retinal rod cell | 5 studies | 20% ± 3% | |
secretory cell | 4 studies | 22% ± 7% | |
granule cell | 4 studies | 61% ± 10% | |
cardiac muscle cell | 4 studies | 24% ± 3% | |
GABAergic interneuron | 3 studies | 69% ± 2% | |
GABAergic amacrine cell | 3 studies | 77% ± 4% | |
OFF-bipolar cell | 3 studies | 18% ± 1% | |
ON-bipolar cell | 3 studies | 58% ± 1% | |
glycinergic amacrine cell | 3 studies | 55% ± 7% | |
rod bipolar cell | 3 studies | 53% ± 5% | |
ependymal cell | 3 studies | 68% ± 17% | |
respiratory goblet cell | 3 studies | 40% ± 18% | |
renal principal cell | 3 studies | 29% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5990.90 | 2641 / 2642 | 100% | 15.29 | 703 / 705 |
ovary | 94% | 1151.64 | 169 / 180 | 100% | 9.40 | 430 / 430 |
thymus | 98% | 1303.48 | 643 / 653 | 95% | 4.45 | 577 / 605 |
prostate | 92% | 2122.03 | 225 / 245 | 92% | 3.66 | 462 / 502 |
adrenal gland | 98% | 1410.22 | 252 / 258 | 81% | 4.43 | 187 / 230 |
uterus | 79% | 930.51 | 134 / 170 | 80% | 2.78 | 365 / 459 |
breast | 54% | 511.33 | 247 / 459 | 82% | 2.32 | 921 / 1118 |
kidney | 88% | 898.69 | 78 / 89 | 44% | 1.30 | 394 / 901 |
esophagus | 47% | 406.57 | 682 / 1445 | 68% | 1.99 | 125 / 183 |
stomach | 70% | 435.58 | 253 / 359 | 45% | 0.83 | 128 / 286 |
bladder | 57% | 1698.67 | 12 / 21 | 58% | 1.82 | 292 / 504 |
skin | 74% | 1178.07 | 1340 / 1809 | 38% | 0.75 | 180 / 472 |
lung | 43% | 375.19 | 247 / 578 | 61% | 1.51 | 705 / 1155 |
intestine | 63% | 360.03 | 610 / 966 | 38% | 0.65 | 198 / 527 |
tonsil | 0% | 0 | 0 / 0 | 89% | 3.20 | 40 / 45 |
pancreas | 14% | 71.80 | 45 / 328 | 47% | 1.00 | 84 / 178 |
eye | 0% | 0 | 0 / 0 | 55% | 0.98 | 44 / 80 |
heart | 39% | 269.17 | 336 / 861 | 0% | 0 | 0 / 0 |
spleen | 27% | 125.90 | 65 / 241 | 0% | 0 | 0 / 0 |
adipose | 23% | 125.25 | 282 / 1204 | 0% | 0 | 0 / 0 |
muscle | 21% | 117.39 | 168 / 803 | 0% | 0 | 0 / 0 |
liver | 3% | 13.08 | 7 / 226 | 14% | 0.28 | 55 / 406 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.21 | 4 / 29 |
peripheral blood | 7% | 56.27 | 67 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 6% | 35.06 | 84 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007165 | Biological process | signal transduction |
GO_0030336 | Biological process | negative regulation of cell migration |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0005829 | Cellular component | cytosol |
GO_0098794 | Cellular component | postsynapse |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | SRGAP3 |
Protein name | SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (Mental disorder-associated GAP) (Rho GTPase-activating protein 14) (WAVE-associated Rac GTPase-activating protein) (WRP) SRGAP3 SRGAP3 protein |
Synonyms | ARHGAP14 KIAA0411 SRGAP2 KIAA1156 MEGAP |
Description | FUNCTION: GTPase-activating protein for RAC1 and perhaps Cdc42, but not for RhoA small GTPase. May attenuate RAC1 signaling in neurons. . |
Accessions | O43295 Q8IXS7 ENST00000383836.8 [O43295-1] ENST00000360413.7 [O43295-2] A0A2X0U4U8 |