Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 11026.16 | 245 / 245 | 99% | 835.38 | 498 / 502 |
liver | 100% | 4503.65 | 226 / 226 | 96% | 95.79 | 389 / 406 |
intestine | 100% | 5290.00 | 964 / 966 | 87% | 41.63 | 461 / 527 |
stomach | 98% | 3326.44 | 352 / 359 | 89% | 41.58 | 254 / 286 |
breast | 99% | 5005.94 | 453 / 459 | 75% | 30.66 | 838 / 1118 |
esophagus | 99% | 3778.10 | 1427 / 1445 | 74% | 28.21 | 136 / 183 |
kidney | 94% | 3322.88 | 84 / 89 | 76% | 76.65 | 683 / 901 |
skin | 97% | 6200.24 | 1763 / 1809 | 67% | 59.50 | 314 / 472 |
bladder | 100% | 6601.14 | 21 / 21 | 63% | 30.76 | 320 / 504 |
uterus | 100% | 13553.09 | 170 / 170 | 63% | 33.19 | 290 / 459 |
lung | 100% | 6171.30 | 576 / 578 | 60% | 24.45 | 696 / 1155 |
pancreas | 55% | 818.83 | 182 / 328 | 92% | 84.48 | 164 / 178 |
ovary | 89% | 3166.96 | 160 / 180 | 46% | 12.80 | 198 / 430 |
adrenal gland | 97% | 3473.43 | 250 / 258 | 10% | 3.52 | 23 / 230 |
spleen | 100% | 3003.53 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 98% | 5312.68 | 1175 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 124.77 | 75 / 80 |
heart | 82% | 1737.70 | 705 / 861 | 0% | 0 | 0 / 0 |
thymus | 71% | 1494.41 | 462 / 653 | 6% | 1.09 | 34 / 605 |
peripheral blood | 71% | 3699.53 | 663 / 929 | 0% | 0 | 0 / 0 |
brain | 33% | 811.03 | 874 / 2642 | 10% | 3.23 | 73 / 705 |
tonsil | 0% | 0 | 0 / 0 | 40% | 15.02 | 18 / 45 |
blood vessel | 34% | 702.64 | 460 / 1335 | 0% | 0 | 0 / 0 |
muscle | 32% | 485.75 | 256 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 5.37 | 6 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0002448 | Biological process | mast cell mediated immunity |
GO_0051607 | Biological process | defense response to virus |
GO_0008228 | Biological process | opsonization |
GO_0050832 | Biological process | defense response to fungus |
GO_0043152 | Biological process | induction of bacterial agglutination |
GO_0007155 | Biological process | cell adhesion |
GO_0032755 | Biological process | positive regulation of interleukin-6 production |
GO_0032760 | Biological process | positive regulation of tumor necrosis factor production |
GO_0045087 | Biological process | innate immune response |
GO_0060907 | Biological process | positive regulation of macrophage cytokine production |
GO_0070062 | Cellular component | extracellular exosome |
GO_0031012 | Cellular component | extracellular matrix |
GO_0003823 | Molecular function | antigen binding |
GO_0001530 | Molecular function | lipopolysaccharide binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | SPON2 |
Protein name | Spondin 2 Spondin-2 (Differentially expressed in cancerous and non-cancerous lung cells 1) (DIL-1) (Mindin) |
Synonyms | DIL1 UNQ435/PRO866 |
Description | FUNCTION: Cell adhesion protein that promotes adhesion and outgrowth of hippocampal embryonic neurons. Binds directly to bacteria and their components and functions as an opsonin for macrophage phagocytosis of bacteria. Essential in the initiation of the innate immune response and represents a unique pattern-recognition molecule in the ECM for microbial pathogens (By similarity). Binds bacterial lipopolysaccharide (LPS). . |
Accessions | ENST00000431380.5 ENST00000290902.10 D6RA41 D6RIH5 D6REX2 ENST00000515004.5 A0A1Y8ELY7 ENST00000511672.5 ENST00000503765.5 ENST00000511679.5 D6RB12 ENST00000502483.5 ENST00000509233.5 D6RBY3 ENST00000617421.4 D6RFY9 ENST00000514490.5 Q9BUD6 |