Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 69% ± 16% | |
astrocyte | 13 studies | 36% ± 19% | |
GABAergic neuron | 11 studies | 46% ± 27% | |
glutamatergic neuron | 11 studies | 51% ± 25% | |
oligodendrocyte precursor cell | 10 studies | 26% ± 10% | |
epithelial cell | 9 studies | 36% ± 19% | |
endothelial cell | 8 studies | 31% ± 14% | |
adipocyte | 8 studies | 28% ± 8% | |
retinal cone cell | 7 studies | 64% ± 21% | |
fibroblast | 7 studies | 21% ± 7% | |
neuron | 6 studies | 39% ± 16% | |
interneuron | 6 studies | 54% ± 26% | |
retinal rod cell | 6 studies | 33% ± 11% | |
Mueller cell | 6 studies | 28% ± 10% | |
type I pneumocyte | 6 studies | 21% ± 4% | |
amacrine cell | 5 studies | 29% ± 10% | |
retina horizontal cell | 5 studies | 25% ± 7% | |
deuterosomal cell | 4 studies | 32% ± 5% | |
retinal ganglion cell | 4 studies | 34% ± 19% | |
retinal bipolar neuron | 4 studies | 22% ± 4% | |
oligodendrocyte | 4 studies | 40% ± 22% | |
club cell | 4 studies | 21% ± 4% | |
basal cell | 4 studies | 41% ± 15% | |
goblet cell | 4 studies | 27% ± 8% | |
pancreatic A cell | 3 studies | 26% ± 7% | |
type B pancreatic cell | 3 studies | 30% ± 10% | |
GABAergic interneuron | 3 studies | 42% ± 14% | |
microglial cell | 3 studies | 39% ± 26% | |
GABAergic amacrine cell | 3 studies | 29% ± 12% | |
OFF-bipolar cell | 3 studies | 37% ± 16% | |
glycinergic amacrine cell | 3 studies | 31% ± 8% | |
connective tissue cell | 3 studies | 22% ± 2% | |
ependymal cell | 3 studies | 69% ± 8% | |
type II pneumocyte | 3 studies | 18% ± 1% | |
transit amplifying cell | 3 studies | 34% ± 25% | |
kidney loop of Henle epithelial cell | 3 studies | 23% ± 4% | |
renal principal cell | 3 studies | 41% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1585.26 | 2642 / 2642 | 100% | 15.74 | 704 / 705 |
thymus | 100% | 1100.91 | 653 / 653 | 99% | 9.29 | 600 / 605 |
pancreas | 99% | 498.14 | 325 / 328 | 99% | 8.09 | 176 / 178 |
prostate | 100% | 952.64 | 245 / 245 | 97% | 10.03 | 488 / 502 |
kidney | 100% | 961.27 | 89 / 89 | 95% | 6.24 | 858 / 901 |
adrenal gland | 100% | 799.04 | 257 / 258 | 93% | 6.47 | 215 / 230 |
ovary | 100% | 1268.03 | 180 / 180 | 93% | 5.54 | 398 / 430 |
uterus | 100% | 924.20 | 170 / 170 | 89% | 6.34 | 409 / 459 |
lung | 97% | 542.63 | 561 / 578 | 89% | 5.31 | 1032 / 1155 |
bladder | 100% | 1071.24 | 21 / 21 | 86% | 6.65 | 431 / 504 |
esophagus | 100% | 972.13 | 1445 / 1445 | 84% | 3.93 | 153 / 183 |
breast | 100% | 882.92 | 459 / 459 | 80% | 7.24 | 894 / 1118 |
stomach | 100% | 701.50 | 359 / 359 | 69% | 3.39 | 196 / 286 |
intestine | 100% | 803.53 | 964 / 966 | 69% | 3.45 | 361 / 527 |
skin | 100% | 1046.29 | 1806 / 1809 | 61% | 2.77 | 286 / 472 |
liver | 94% | 357.77 | 213 / 226 | 66% | 3.22 | 266 / 406 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.78 | 1 / 1 |
blood vessel | 100% | 949.69 | 1332 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 699.18 | 1200 / 1204 | 0% | 0 | 0 / 0 |
spleen | 99% | 412.35 | 239 / 241 | 0% | 0 | 0 / 0 |
heart | 94% | 620.76 | 812 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 4.24 | 39 / 45 |
lymph node | 0% | 0 | 0 / 0 | 83% | 3.26 | 24 / 29 |
muscle | 81% | 314.73 | 647 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 46% | 1.89 | 37 / 80 |
peripheral blood | 19% | 167.12 | 178 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0007288 | Biological process | sperm axoneme assembly |
GO_0090660 | Biological process | cerebrospinal fluid circulation |
GO_0120197 | Biological process | mucociliary clearance |
GO_0035082 | Biological process | axoneme assembly |
GO_0005930 | Cellular component | axoneme |
GO_1990716 | Cellular component | axonemal central apparatus |
GO_0036126 | Cellular component | sperm flagellum |
GO_0005576 | Cellular component | extracellular region |
Gene name | SPAG16 |
Protein name | SPAG16 protein Sperm associated antigen 16 Sperm-associated antigen 16 protein (Pf20 protein homolog) |
Synonyms | PF20 |
Description | FUNCTION: Necessary for sperm flagellar function. Plays a role in motile ciliogenesis. May help to recruit STK36 to the cilium or apical surface of the cell to initiate subsequent steps of construction of the central pair apparatus of motile cilia (By similarity). . |
Accessions | F8WBY1 ENST00000331683.10 [Q8N0X2-1] ENST00000447990.1 F8WB32 ENST00000420497.6 H0Y811 F8WBQ0 ENST00000451561.1 E7EWV3 E9PE90 ENST00000406979.6 Q4G1A2 Q8N0X2 ENST00000452556.5 ENST00000413312.5 ENST00000440779.5 A0A0C4DG20 ENST00000432529.6 [Q8N0X2-4] |