Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 12 studies | 31% ± 19% | |
endothelial cell | 10 studies | 33% ± 10% | |
macrophage | 7 studies | 26% ± 12% | |
adipocyte | 6 studies | 34% ± 6% | |
ciliated cell | 6 studies | 30% ± 12% | |
type II pneumocyte | 6 studies | 47% ± 10% | |
smooth muscle cell | 6 studies | 33% ± 13% | |
monocyte | 6 studies | 33% ± 13% | |
hepatocyte | 5 studies | 62% ± 24% | |
pericyte | 5 studies | 28% ± 13% | |
fibroblast | 5 studies | 24% ± 5% | |
T cell | 5 studies | 24% ± 7% | |
alveolar macrophage | 5 studies | 54% ± 27% | |
type I pneumocyte | 5 studies | 29% ± 5% | |
ionocyte | 3 studies | 33% ± 5% | |
classical monocyte | 3 studies | 18% ± 0% | |
myeloid cell | 3 studies | 31% ± 18% | |
ependymal cell | 3 studies | 46% ± 18% | |
club cell | 3 studies | 35% ± 10% | |
natural killer cell | 3 studies | 25% ± 6% | |
lymphocyte | 3 studies | 31% ± 6% | |
renal alpha-intercalated cell | 3 studies | 63% ± 27% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 34% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 5676.13 | 226 / 226 | 99% | 55.06 | 402 / 406 |
thymus | 100% | 7233.94 | 652 / 653 | 91% | 48.27 | 552 / 605 |
intestine | 96% | 965.22 | 923 / 966 | 93% | 25.93 | 492 / 527 |
kidney | 100% | 1937.92 | 89 / 89 | 88% | 25.14 | 790 / 901 |
pancreas | 100% | 2160.52 | 328 / 328 | 87% | 12.95 | 155 / 178 |
stomach | 98% | 2006.59 | 351 / 359 | 85% | 24.48 | 243 / 286 |
skin | 99% | 1911.28 | 1798 / 1809 | 82% | 24.21 | 385 / 472 |
lung | 100% | 2630.58 | 576 / 578 | 80% | 21.29 | 929 / 1155 |
brain | 79% | 707.13 | 2078 / 2642 | 89% | 13.31 | 630 / 705 |
breast | 99% | 1330.59 | 454 / 459 | 61% | 7.10 | 685 / 1118 |
esophagus | 98% | 1929.58 | 1416 / 1445 | 58% | 10.88 | 106 / 183 |
adrenal gland | 100% | 13990.77 | 258 / 258 | 53% | 17.73 | 122 / 230 |
bladder | 86% | 647.71 | 18 / 21 | 47% | 11.66 | 236 / 504 |
ovary | 34% | 271.88 | 62 / 180 | 87% | 15.69 | 375 / 430 |
uterus | 78% | 608.27 | 132 / 170 | 36% | 6.53 | 164 / 459 |
prostate | 81% | 732.18 | 198 / 245 | 30% | 2.68 | 149 / 502 |
spleen | 100% | 1532.78 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.37 | 1 / 1 |
blood vessel | 99% | 2050.41 | 1328 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 1605.47 | 1195 / 1204 | 0% | 0 | 0 / 0 |
muscle | 92% | 1261.43 | 736 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 77% | 715.34 | 713 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 62% | 8.73 | 18 / 29 |
heart | 51% | 332.20 | 442 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 33% | 2.51 | 15 / 45 |
eye | 0% | 0 | 0 / 0 | 25% | 1.83 | 20 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006936 | Biological process | muscle contraction |
GO_0005737 | Cellular component | cytoplasm |
GO_0042383 | Cellular component | sarcolemma |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005622 | Cellular component | intracellular anatomical structure |
GO_0045202 | Cellular component | synapse |
GO_0016010 | Cellular component | dystrophin-associated glycoprotein complex |
GO_0005925 | Cellular component | focal adhesion |
GO_0030165 | Molecular function | PDZ domain binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0005198 | Molecular function | structural molecule activity |
Gene name | SNTB1 |
Protein name | Syntrophin beta 1 Beta-1-syntrophin (59 kDa dystrophin-associated protein A1 basic component 1) (DAPA1B) (BSYN2) (Syntrophin-2) (Tax interaction protein 43) (TIP-43) |
Synonyms | SNT2B1 |
Description | FUNCTION: Adapter protein that binds to and probably organizes the subcellular localization of a variety of membrane proteins. May link various receptors to the actin cytoskeleton and the dystrophin glycoprotein complex. |
Accessions | ENST00000648490.1 ENST00000517992.2 [Q13884-1] A0A3B3ITC2 ENST00000520717.1 ENST00000395601.7 [Q13884-1] E5RIX7 Q13884 |