Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 15 studies | 30% ± 13% | |
| astrocyte | 13 studies | 33% ± 13% | |
| oligodendrocyte precursor cell | 12 studies | 42% ± 18% | |
| microglial cell | 11 studies | 28% ± 11% | |
| oligodendrocyte | 11 studies | 30% ± 11% | |
| GABAergic neuron | 10 studies | 44% ± 23% | |
| macrophage | 10 studies | 34% ± 12% | |
| B cell | 9 studies | 41% ± 17% | |
| glutamatergic neuron | 8 studies | 42% ± 21% | |
| ciliated cell | 7 studies | 36% ± 16% | |
| endothelial cell of lymphatic vessel | 7 studies | 33% ± 9% | |
| interneuron | 6 studies | 49% ± 18% | |
| epithelial cell | 6 studies | 38% ± 18% | |
| fibroblast | 6 studies | 23% ± 5% | |
| naive B cell | 5 studies | 19% ± 3% | |
| adipocyte | 5 studies | 20% ± 3% | |
| dendritic cell | 5 studies | 39% ± 13% | |
| myeloid cell | 5 studies | 28% ± 7% | |
| basal cell | 5 studies | 45% ± 22% | |
| type I pneumocyte | 5 studies | 54% ± 7% | |
| type II pneumocyte | 5 studies | 39% ± 7% | |
| neuron | 4 studies | 52% ± 14% | |
| amacrine cell | 4 studies | 46% ± 23% | |
| retina horizontal cell | 4 studies | 51% ± 6% | |
| club cell | 4 studies | 41% ± 10% | |
| monocyte | 4 studies | 31% ± 7% | |
| goblet cell | 4 studies | 36% ± 28% | |
| GABAergic interneuron | 3 studies | 37% ± 7% | |
| granule cell | 3 studies | 53% ± 23% | |
| pericyte | 3 studies | 32% ± 17% | |
| plasma cell | 3 studies | 40% ± 17% | |
| GABAergic amacrine cell | 3 studies | 62% ± 5% | |
| glycinergic amacrine cell | 3 studies | 35% ± 13% | |
| endothelial cell of vascular tree | 3 studies | 23% ± 10% | |
| hepatocyte | 3 studies | 46% ± 19% | |
| retinal pigment epithelial cell | 3 studies | 35% ± 10% | |
| T cell | 3 studies | 24% ± 10% | |
| alveolar macrophage | 3 studies | 30% ± 5% | |
| respiratory goblet cell | 3 studies | 45% ± 16% | |
| smooth muscle cell | 3 studies | 19% ± 2% | |
| lymphocyte | 3 studies | 30% ± 6% | |
| mucus secreting cell | 3 studies | 43% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| prostate | 100% | 2250.48 | 244 / 245 | 100% | 33.26 | 502 / 502 |
| esophagus | 99% | 1125.70 | 1434 / 1445 | 100% | 58.47 | 183 / 183 |
| intestine | 100% | 2724.45 | 962 / 966 | 100% | 31.26 | 525 / 527 |
| pancreas | 100% | 1660.88 | 327 / 328 | 99% | 28.33 | 177 / 178 |
| ovary | 99% | 1092.14 | 179 / 180 | 99% | 30.23 | 427 / 430 |
| stomach | 100% | 1729.08 | 358 / 359 | 99% | 37.90 | 283 / 286 |
| lung | 99% | 1874.33 | 574 / 578 | 99% | 31.51 | 1139 / 1155 |
| uterus | 100% | 1295.51 | 170 / 170 | 98% | 23.71 | 449 / 459 |
| breast | 98% | 1730.36 | 449 / 459 | 100% | 35.68 | 1114 / 1118 |
| bladder | 100% | 1650.10 | 21 / 21 | 97% | 23.01 | 491 / 504 |
| kidney | 100% | 2271.15 | 89 / 89 | 96% | 16.30 | 869 / 901 |
| thymus | 100% | 4281.25 | 653 / 653 | 96% | 16.75 | 581 / 605 |
| brain | 98% | 1553.93 | 2596 / 2642 | 95% | 12.24 | 668 / 705 |
| skin | 100% | 3300.48 | 1809 / 1809 | 92% | 12.34 | 434 / 472 |
| liver | 96% | 712.39 | 216 / 226 | 66% | 9.27 | 266 / 406 |
| adrenal gland | 100% | 1010.26 | 257 / 258 | 58% | 4.86 | 133 / 230 |
| spleen | 100% | 2179.45 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 25.15 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 8.62 | 1 / 1 |
| adipose | 98% | 840.90 | 1174 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 96% | 828.52 | 1285 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 95% | 1003.61 | 766 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 93% | 19.22 | 27 / 29 |
| heart | 91% | 824.31 | 783 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 84% | 7.06 | 67 / 80 |
| peripheral blood | 65% | 1570.00 | 606 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
| GO_0003382 | Biological process | epithelial cell morphogenesis |
| GO_0002244 | Biological process | hematopoietic progenitor cell differentiation |
| GO_0007010 | Biological process | cytoskeleton organization |
| GO_0090162 | Biological process | establishment of epithelial cell polarity |
| GO_0001654 | Biological process | eye development |
| GO_0016324 | Cellular component | apical plasma membrane |
| GO_0005615 | Cellular component | extracellular space |
| GO_0001725 | Cellular component | stress fiber |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0061689 | Cellular component | tricellular tight junction |
| GO_0005794 | Cellular component | Golgi apparatus |
| GO_0045177 | Cellular component | apical part of cell |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0005515 | Molecular function | protein binding |
| GO_0005096 | Molecular function | GTPase activator activity |
| Gene name | SIPA1L3 |
| Protein name | Signal induced proliferation associated 1 like 3 SIPA1L3 protein Signal-induced proliferation-associated 1-like protein 3 (SIPA1-like protein 3) (SPA-1-like protein 3) Signal-induced proliferation-associated 1 like 3 |
| Synonyms | SPAL3 KIAA0545 |
| Description | FUNCTION: Plays a critical role in epithelial cell morphogenesis, polarity, adhesion and cytoskeletal organization in the lens . . |
| Accessions | ENST00000222345.11 M0QX89 M0R2Q7 ENST00000601054.1 O60292 Q8IUV1 B2RWP0 ENST00000595384.1 |