Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 30% ± 13% | |
astrocyte | 13 studies | 33% ± 13% | |
oligodendrocyte precursor cell | 12 studies | 42% ± 18% | |
microglial cell | 11 studies | 28% ± 11% | |
oligodendrocyte | 11 studies | 30% ± 11% | |
GABAergic neuron | 10 studies | 44% ± 23% | |
macrophage | 10 studies | 34% ± 12% | |
B cell | 9 studies | 41% ± 17% | |
glutamatergic neuron | 8 studies | 42% ± 21% | |
ciliated cell | 7 studies | 36% ± 16% | |
endothelial cell of lymphatic vessel | 7 studies | 33% ± 9% | |
interneuron | 6 studies | 49% ± 18% | |
epithelial cell | 6 studies | 38% ± 18% | |
fibroblast | 6 studies | 23% ± 5% | |
naive B cell | 5 studies | 19% ± 3% | |
adipocyte | 5 studies | 20% ± 3% | |
dendritic cell | 5 studies | 39% ± 13% | |
myeloid cell | 5 studies | 28% ± 7% | |
basal cell | 5 studies | 45% ± 22% | |
type I pneumocyte | 5 studies | 54% ± 7% | |
type II pneumocyte | 5 studies | 39% ± 7% | |
neuron | 4 studies | 52% ± 14% | |
amacrine cell | 4 studies | 46% ± 23% | |
retina horizontal cell | 4 studies | 51% ± 6% | |
club cell | 4 studies | 41% ± 10% | |
monocyte | 4 studies | 31% ± 7% | |
goblet cell | 4 studies | 36% ± 28% | |
GABAergic interneuron | 3 studies | 37% ± 7% | |
granule cell | 3 studies | 53% ± 23% | |
pericyte | 3 studies | 32% ± 17% | |
plasma cell | 3 studies | 40% ± 17% | |
GABAergic amacrine cell | 3 studies | 62% ± 5% | |
glycinergic amacrine cell | 3 studies | 35% ± 13% | |
endothelial cell of vascular tree | 3 studies | 23% ± 10% | |
hepatocyte | 3 studies | 46% ± 19% | |
retinal pigment epithelial cell | 3 studies | 35% ± 10% | |
T cell | 3 studies | 24% ± 10% | |
alveolar macrophage | 3 studies | 30% ± 5% | |
respiratory goblet cell | 3 studies | 45% ± 16% | |
smooth muscle cell | 3 studies | 19% ± 2% | |
lymphocyte | 3 studies | 30% ± 6% | |
mucus secreting cell | 3 studies | 43% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2250.48 | 244 / 245 | 100% | 33.26 | 502 / 502 |
esophagus | 99% | 1125.70 | 1434 / 1445 | 100% | 58.47 | 183 / 183 |
intestine | 100% | 2724.45 | 962 / 966 | 100% | 31.26 | 525 / 527 |
pancreas | 100% | 1660.88 | 327 / 328 | 99% | 28.33 | 177 / 178 |
ovary | 99% | 1092.14 | 179 / 180 | 99% | 30.23 | 427 / 430 |
stomach | 100% | 1729.08 | 358 / 359 | 99% | 37.90 | 283 / 286 |
lung | 99% | 1874.33 | 574 / 578 | 99% | 31.51 | 1139 / 1155 |
uterus | 100% | 1295.51 | 170 / 170 | 98% | 23.71 | 449 / 459 |
breast | 98% | 1730.36 | 449 / 459 | 100% | 35.68 | 1114 / 1118 |
bladder | 100% | 1650.10 | 21 / 21 | 97% | 23.01 | 491 / 504 |
kidney | 100% | 2271.15 | 89 / 89 | 96% | 16.30 | 869 / 901 |
thymus | 100% | 4281.25 | 653 / 653 | 96% | 16.75 | 581 / 605 |
brain | 98% | 1553.93 | 2596 / 2642 | 95% | 12.24 | 668 / 705 |
skin | 100% | 3300.48 | 1809 / 1809 | 92% | 12.34 | 434 / 472 |
liver | 96% | 712.39 | 216 / 226 | 66% | 9.27 | 266 / 406 |
adrenal gland | 100% | 1010.26 | 257 / 258 | 58% | 4.86 | 133 / 230 |
spleen | 100% | 2179.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.15 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.62 | 1 / 1 |
adipose | 98% | 840.90 | 1174 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 828.52 | 1285 / 1335 | 0% | 0 | 0 / 0 |
muscle | 95% | 1003.61 | 766 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 19.22 | 27 / 29 |
heart | 91% | 824.31 | 783 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 84% | 7.06 | 67 / 80 |
peripheral blood | 65% | 1570.00 | 606 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0003382 | Biological process | epithelial cell morphogenesis |
GO_0002244 | Biological process | hematopoietic progenitor cell differentiation |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0090162 | Biological process | establishment of epithelial cell polarity |
GO_0001654 | Biological process | eye development |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0005615 | Cellular component | extracellular space |
GO_0001725 | Cellular component | stress fiber |
GO_0005654 | Cellular component | nucleoplasm |
GO_0061689 | Cellular component | tricellular tight junction |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0045177 | Cellular component | apical part of cell |
GO_0005886 | Cellular component | plasma membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | SIPA1L3 |
Protein name | Signal induced proliferation associated 1 like 3 SIPA1L3 protein Signal-induced proliferation-associated 1-like protein 3 (SIPA1-like protein 3) (SPA-1-like protein 3) Signal-induced proliferation-associated 1 like 3 |
Synonyms | SPAL3 KIAA0545 |
Description | FUNCTION: Plays a critical role in epithelial cell morphogenesis, polarity, adhesion and cytoskeletal organization in the lens . . |
Accessions | ENST00000222345.11 M0QX89 M0R2Q7 ENST00000601054.1 O60292 Q8IUV1 B2RWP0 ENST00000595384.1 |