Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 18 studies | 41% ± 17% | |
astrocyte | 18 studies | 51% ± 19% | |
type I pneumocyte | 11 studies | 50% ± 24% | |
epithelial cell | 10 studies | 32% ± 18% | |
glutamatergic neuron | 8 studies | 37% ± 19% | |
type II pneumocyte | 7 studies | 48% ± 18% | |
goblet cell | 6 studies | 35% ± 27% | |
retinal cone cell | 6 studies | 24% ± 5% | |
club cell | 6 studies | 50% ± 18% | |
cholangiocyte | 4 studies | 62% ± 13% | |
hepatocyte | 4 studies | 68% ± 23% | |
retinal pigment epithelial cell | 4 studies | 42% ± 15% | |
cardiac muscle cell | 4 studies | 30% ± 5% | |
Mueller cell | 4 studies | 38% ± 22% | |
retinal rod cell | 4 studies | 20% ± 3% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 27% ± 9% | |
respiratory goblet cell | 4 studies | 38% ± 18% | |
fibroblast | 4 studies | 30% ± 9% | |
ionocyte | 3 studies | 26% ± 3% | |
endothelial cell | 3 studies | 42% ± 15% | |
granule cell | 3 studies | 46% ± 4% | |
interneuron | 3 studies | 20% ± 5% | |
GABAergic neuron | 3 studies | 32% ± 6% | |
ependymal cell | 3 studies | 52% ± 9% | |
enteroendocrine cell | 3 studies | 27% ± 4% | |
brush cell | 3 studies | 20% ± 6% | |
smooth muscle cell | 3 studies | 17% ± 3% | |
kidney loop of Henle epithelial cell | 3 studies | 31% ± 13% | |
renal alpha-intercalated cell | 3 studies | 57% ± 30% | |
mucus secreting cell | 3 studies | 40% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 3486.97 | 243 / 245 | 100% | 33.50 | 500 / 502 |
intestine | 99% | 5340.72 | 953 / 966 | 99% | 30.16 | 520 / 527 |
stomach | 95% | 5238.54 | 340 / 359 | 98% | 32.56 | 280 / 286 |
lung | 99% | 3398.41 | 570 / 578 | 79% | 16.10 | 913 / 1155 |
esophagus | 98% | 4323.96 | 1419 / 1445 | 77% | 28.89 | 141 / 183 |
pancreas | 84% | 1297.90 | 275 / 328 | 91% | 29.01 | 162 / 178 |
thymus | 97% | 1485.40 | 633 / 653 | 76% | 9.19 | 459 / 605 |
breast | 64% | 3070.13 | 293 / 459 | 97% | 34.69 | 1084 / 1118 |
kidney | 100% | 2893.47 | 89 / 89 | 50% | 7.61 | 453 / 901 |
liver | 97% | 1795.77 | 220 / 226 | 47% | 6.26 | 190 / 406 |
bladder | 81% | 2114.43 | 17 / 21 | 55% | 9.94 | 279 / 504 |
ovary | 12% | 174.53 | 22 / 180 | 92% | 16.44 | 396 / 430 |
uterus | 48% | 737.21 | 81 / 170 | 53% | 7.85 | 242 / 459 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.53 | 1 / 1 |
skin | 85% | 1365.05 | 1532 / 1809 | 15% | 1.69 | 71 / 472 |
blood vessel | 100% | 5901.31 | 1330 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 51% | 464.50 | 131 / 258 | 44% | 5.08 | 101 / 230 |
spleen | 85% | 1035.37 | 204 / 241 | 0% | 0 | 0 / 0 |
brain | 46% | 862.97 | 1214 / 2642 | 20% | 1.92 | 143 / 705 |
heart | 65% | 781.85 | 558 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 40% | 4.19 | 18 / 45 |
adipose | 22% | 294.12 | 267 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 11% | 0.85 | 9 / 80 |
peripheral blood | 9% | 157.07 | 85 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.36 | 1 / 29 |
muscle | 1% | 9.05 | 8 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043482 | Biological process | cellular pigment accumulation |
GO_0007015 | Biological process | actin filament organization |
GO_0008360 | Biological process | regulation of cell shape |
GO_0000902 | Biological process | cell morphogenesis |
GO_0045176 | Biological process | apical protein localization |
GO_0007389 | Biological process | pattern specification process |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0043296 | Cellular component | apical junction complex |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005912 | Cellular component | adherens junction |
GO_0030864 | Cellular component | cortical actin cytoskeleton |
GO_0005874 | Cellular component | microtubule |
GO_0051015 | Molecular function | actin filament binding |
Gene name | SHROOM3 |
Protein name | Protein Shroom3 (Shroom-related protein) (hShrmL) Shroom family member 3 |
Synonyms | SHRML KIAA1481 MSTP013 |
Description | FUNCTION: Controls cell shape changes in the neuroepithelium during neural tube closure. Induces apical constriction in epithelial cells by promoting the apical accumulation of F-actin and myosin II, and probably by bundling stress fibers (By similarity). Induces apicobasal cell elongation by redistributing gamma-tubulin and directing the assembly of robust apicobasal microtubule arrays (By similarity). . |
Accessions | ENST00000644244.1 ENST00000296043.7 [Q8TF72-1] A0A2R8Y7T7 ENST00000646790.1 Q8TF72 A0A2R8Y5P9 |