Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 32% ± 14% | |
macrophage | 11 studies | 29% ± 14% | |
microglial cell | 11 studies | 32% ± 11% | |
astrocyte | 11 studies | 30% ± 13% | |
glutamatergic neuron | 9 studies | 39% ± 26% | |
oligodendrocyte precursor cell | 9 studies | 28% ± 12% | |
fibroblast | 9 studies | 29% ± 13% | |
oligodendrocyte | 9 studies | 27% ± 9% | |
GABAergic neuron | 8 studies | 42% ± 22% | |
pericyte | 8 studies | 24% ± 9% | |
adipocyte | 8 studies | 25% ± 7% | |
epithelial cell | 7 studies | 33% ± 20% | |
interneuron | 6 studies | 41% ± 24% | |
dendritic cell | 6 studies | 21% ± 3% | |
endothelial cell of lymphatic vessel | 6 studies | 34% ± 14% | |
smooth muscle cell | 6 studies | 24% ± 5% | |
neuron | 5 studies | 35% ± 15% | |
ciliated cell | 5 studies | 26% ± 9% | |
monocyte | 5 studies | 24% ± 6% | |
club cell | 5 studies | 25% ± 9% | |
type I pneumocyte | 5 studies | 28% ± 9% | |
type II pneumocyte | 5 studies | 23% ± 8% | |
granule cell | 4 studies | 21% ± 3% | |
B cell | 4 studies | 21% ± 6% | |
cardiac muscle cell | 4 studies | 18% ± 0% | |
retinal rod cell | 4 studies | 31% ± 7% | |
basal cell | 4 studies | 36% ± 26% | |
GABAergic interneuron | 3 studies | 24% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 1% | |
mast cell | 3 studies | 21% ± 4% | |
mesothelial cell | 3 studies | 31% ± 9% | |
vein endothelial cell | 3 studies | 41% ± 27% | |
Mueller cell | 3 studies | 33% ± 7% | |
retina horizontal cell | 3 studies | 26% ± 9% | |
retinal cone cell | 3 studies | 25% ± 9% | |
myeloid cell | 3 studies | 23% ± 3% | |
endothelial cell of vascular tree | 3 studies | 39% ± 24% | |
hepatocyte | 3 studies | 66% ± 19% | |
abnormal cell | 3 studies | 25% ± 13% | |
ependymal cell | 3 studies | 30% ± 11% | |
T cell | 3 studies | 24% ± 4% | |
alveolar macrophage | 3 studies | 32% ± 10% | |
capillary endothelial cell | 3 studies | 21% ± 4% | |
natural killer cell | 3 studies | 21% ± 3% | |
respiratory goblet cell | 3 studies | 27% ± 11% | |
lymphocyte | 3 studies | 31% ± 14% | |
goblet cell | 3 studies | 39% ± 31% | |
transit amplifying cell | 3 studies | 39% ± 34% | |
mural cell | 3 studies | 30% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3514.73 | 1445 / 1445 | 100% | 42.56 | 183 / 183 |
lung | 100% | 3733.32 | 578 / 578 | 100% | 30.13 | 1155 / 1155 |
prostate | 100% | 3184.10 | 245 / 245 | 100% | 35.09 | 502 / 502 |
breast | 100% | 4485.70 | 459 / 459 | 100% | 41.14 | 1116 / 1118 |
ovary | 100% | 3866.63 | 180 / 180 | 100% | 21.32 | 429 / 430 |
stomach | 100% | 2500.49 | 359 / 359 | 100% | 31.88 | 285 / 286 |
intestine | 100% | 3450.15 | 966 / 966 | 100% | 29.09 | 525 / 527 |
bladder | 100% | 3909.29 | 21 / 21 | 100% | 26.90 | 502 / 504 |
pancreas | 100% | 1867.30 | 328 / 328 | 99% | 29.23 | 177 / 178 |
uterus | 100% | 3967.29 | 170 / 170 | 99% | 25.56 | 456 / 459 |
kidney | 100% | 2196.44 | 89 / 89 | 99% | 32.18 | 894 / 901 |
thymus | 100% | 3365.68 | 653 / 653 | 99% | 32.70 | 600 / 605 |
adrenal gland | 100% | 3148.83 | 258 / 258 | 98% | 24.43 | 226 / 230 |
brain | 98% | 1757.77 | 2592 / 2642 | 100% | 31.26 | 705 / 705 |
skin | 100% | 4584.38 | 1809 / 1809 | 96% | 31.34 | 455 / 472 |
liver | 100% | 3294.10 | 226 / 226 | 96% | 20.35 | 391 / 406 |
adipose | 100% | 4497.27 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4063.50 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.88 | 29 / 29 |
muscle | 100% | 3724.21 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2958.33 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 27.35 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.24 | 1 / 1 |
heart | 97% | 2184.82 | 835 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 1947.45 | 837 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 15.93 | 71 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0090178 | Biological process | regulation of establishment of planar polarity involved in neural tube closure |
GO_0021747 | Biological process | cochlear nucleus development |
GO_0003151 | Biological process | outflow tract morphogenesis |
GO_0006886 | Biological process | intracellular protein transport |
GO_0060088 | Biological process | auditory receptor cell stereocilium organization |
GO_0060463 | Biological process | lung lobe morphogenesis |
GO_0035909 | Biological process | aorta morphogenesis |
GO_1901301 | Biological process | regulation of cargo loading into COPII-coated vesicle |
GO_0001843 | Biological process | neural tube closure |
GO_0061156 | Biological process | pulmonary artery morphogenesis |
GO_0060982 | Biological process | coronary artery morphogenesis |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0090110 | Biological process | COPII-coated vesicle cargo loading |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030127 | Cellular component | COPII vesicle coat |
GO_0070971 | Cellular component | endoplasmic reticulum exit site |
GO_0005829 | Cellular component | cytosol |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0000149 | Molecular function | SNARE binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SEC24B |
Protein name | Protein transport protein Sec24B (SEC24-related protein B) |
Synonyms | |
Description | FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex . Plays a central role in cargo selection within the COPII complex and together with SEC24A may have a different specificity compared to SEC24C and SEC24D. May package preferentially cargos with cytoplasmic DxE or LxxLE motifs and may also recognize conformational epitopes . . |
Accessions | ENST00000399100.6 [O95487-2] ENST00000265175.5 [O95487-1] ENST00000504968.6 [O95487-3] O95487 |