Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 8 studies | 27% ± 11% | |
classical monocyte | 7 studies | 29% ± 11% | |
epithelial cell | 4 studies | 20% ± 2% | |
dendritic cell | 3 studies | 24% ± 2% | |
non-classical monocyte | 3 studies | 19% ± 2% | |
myeloid cell | 3 studies | 25% ± 6% | |
ciliated cell | 3 studies | 22% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 612.82 | 2629 / 2642 | 100% | 59.94 | 704 / 705 |
uterus | 100% | 712.94 | 170 / 170 | 99% | 36.53 | 455 / 459 |
intestine | 100% | 928.49 | 965 / 966 | 99% | 25.49 | 520 / 527 |
prostate | 99% | 601.90 | 242 / 245 | 100% | 26.60 | 500 / 502 |
breast | 100% | 651.88 | 458 / 459 | 99% | 35.13 | 1102 / 1118 |
esophagus | 100% | 854.47 | 1438 / 1445 | 98% | 26.72 | 180 / 183 |
thymus | 100% | 572.57 | 652 / 653 | 98% | 21.31 | 590 / 605 |
ovary | 100% | 688.86 | 180 / 180 | 97% | 20.73 | 415 / 430 |
lung | 98% | 683.73 | 568 / 578 | 98% | 20.86 | 1133 / 1155 |
bladder | 100% | 957.67 | 21 / 21 | 96% | 22.78 | 484 / 504 |
stomach | 95% | 626.47 | 340 / 359 | 100% | 26.55 | 285 / 286 |
adrenal gland | 97% | 487.29 | 250 / 258 | 97% | 32.27 | 223 / 230 |
skin | 98% | 562.58 | 1775 / 1809 | 95% | 30.34 | 450 / 472 |
kidney | 79% | 260.10 | 70 / 89 | 89% | 32.92 | 798 / 901 |
pancreas | 65% | 169.83 | 213 / 328 | 98% | 24.33 | 175 / 178 |
liver | 58% | 203.86 | 132 / 226 | 74% | 10.07 | 299 / 406 |
blood vessel | 100% | 1540.24 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.06 | 29 / 29 |
spleen | 100% | 776.09 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 36.46 | 45 / 45 |
adipose | 100% | 822.80 | 1201 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 1277.31 | 895 / 929 | 0% | 0 | 0 / 0 |
heart | 95% | 586.38 | 814 / 861 | 0% | 0 | 0 / 0 |
muscle | 83% | 281.25 | 664 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 54% | 6.71 | 43 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030336 | Biological process | negative regulation of cell migration |
GO_0052472 | Biological process | modulation by host of symbiont transcription |
GO_1902455 | Biological process | negative regulation of stem cell population maintenance |
GO_1902459 | Biological process | positive regulation of stem cell population maintenance |
GO_0035914 | Biological process | skeletal muscle cell differentiation |
GO_0030512 | Biological process | negative regulation of transforming growth factor beta receptor signaling pathway |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0000118 | Cellular component | histone deacetylase complex |
GO_0070822 | Cellular component | Sin3-type complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003712 | Molecular function | transcription coregulator activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | SAP30 |
Protein name | Histone deacetylase complex subunit SAP30 (30 kDa Sin3-associated polypeptide) (Sin3 corepressor complex subunit SAP30) (Sin3-associated polypeptide p30) |
Synonyms | |
Description | FUNCTION: Involved in the functional recruitment of the Sin3-histone deacetylase complex (HDAC) to a specific subset of N-CoR corepressor complexes. Capable of transcription repression by N-CoR. Active in deacetylating core histone octamers (when in a complex) but inactive in deacetylating nucleosomal histones. .; FUNCTION: (Microbial infection) Involved in transcriptional repression of HHV-1 genes TK and gC. . |
Accessions | ENST00000296504.4 O75446 |