SAMD3 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	38 studies	44% ± 15%	Explore
CD8-positive, alpha-beta T cell	25 studies	31% ± 14%	Explore
mature NK T cell	20 studies	34% ± 12%	Explore
CD16-positive, CD56-dim natural killer cell, human	16 studies	41% ± 14%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	43% ± 15%	Explore
T cell	14 studies	26% ± 8%	Explore
gamma-delta T cell	13 studies	29% ± 10%	Explore
CD4-positive, alpha-beta T cell	12 studies	27% ± 11%	Explore
mucosal invariant T cell	11 studies	29% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell	10 studies	35% ± 10%	Explore
CD8-positive, alpha-beta memory T cell	9 studies	29% ± 13%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	7 studies	25% ± 8%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	35% ± 11%	Explore
lymphocyte	5 studies	42% ± 15%	Explore
innate lymphoid cell	5 studies	37% ± 11%	Explore
glutamatergic neuron	5 studies	25% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	42% ± 13%	Explore
exhausted T cell	4 studies	29% ± 6%	Explore
retinal ganglion cell	4 studies	20% ± 4%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	21% ± 1%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	3 studies	23% ± 5%	Explore
ON-bipolar cell	3 studies	29% ± 9%	Explore
GABAergic neuron	3 studies	26% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	6 studies	19% ± 1%	Explore
brain	3 studies	21% ± 7%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	84%	108.97	75 / 89	31%	0.55	280 / 901
lung	99%	292.77	574 / 578	15%	0.26	176 / 1155
uterus	99%	338.19	169 / 170	8%	0.14	39 / 459
adrenal gland	99%	229.13	256 / 258	5%	0.09	11 / 230
ovary	100%	185.97	180 / 180	2%	0.02	8 / 430
spleen	100%	844.54	241 / 241	0%	0	0 / 0
breast	77%	62.58	355 / 459	18%	0.34	202 / 1118
thymus	78%	90.19	509 / 653	13%	0.25	81 / 605
adipose	87%	104.55	1052 / 1204	0%	0	0 / 0
peripheral blood	84%	735.38	779 / 929	0%	0	0 / 0
liver	77%	69.81	173 / 226	2%	0.04	8 / 406
intestine	60%	67.01	579 / 966	16%	0.31	86 / 527
prostate	71%	65.34	173 / 245	2%	0.04	11 / 502
pancreas	48%	31.29	159 / 328	22%	0.41	40 / 178
stomach	50%	31.13	180 / 359	20%	0.36	57 / 286
bladder	62%	59.67	13 / 21	7%	0.14	37 / 504
lymph node	0%	0	0 / 0	55%	1.61	16 / 29
blood vessel	53%	57.17	709 / 1335	0%	0	0 / 0
brain	42%	42.97	1107 / 2642	1%	0.01	4 / 705
skin	24%	16.77	439 / 1809	13%	0.27	61 / 472
esophagus	23%	12.47	338 / 1445	4%	0.08	8 / 183
heart	21%	12.79	184 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	18%	0.24	8 / 45
muscle	4%	1.88	30 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1