Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 40 studies | 40% ± 24% | |
endothelial cell | 34 studies | 50% ± 25% | |
pericyte | 27 studies | 41% ± 27% | |
smooth muscle cell | 21 studies | 42% ± 26% | |
astrocyte | 17 studies | 58% ± 24% | |
oligodendrocyte precursor cell | 14 studies | 44% ± 21% | |
myofibroblast cell | 12 studies | 32% ± 16% | |
GABAergic neuron | 11 studies | 57% ± 25% | |
endothelial cell of lymphatic vessel | 10 studies | 41% ± 18% | |
connective tissue cell | 10 studies | 32% ± 14% | |
adipocyte | 10 studies | 59% ± 21% | |
type I pneumocyte | 9 studies | 56% ± 28% | |
glutamatergic neuron | 8 studies | 39% ± 18% | |
endothelial cell of artery | 7 studies | 32% ± 21% | |
capillary endothelial cell | 6 studies | 32% ± 15% | |
neuron | 6 studies | 41% ± 18% | |
basal cell | 6 studies | 38% ± 25% | |
club cell | 6 studies | 41% ± 15% | |
interneuron | 5 studies | 73% ± 21% | |
mesothelial cell | 5 studies | 52% ± 27% | |
vein endothelial cell | 5 studies | 38% ± 21% | |
endothelial cell of vascular tree | 5 studies | 41% ± 20% | |
macrophage | 4 studies | 36% ± 31% | |
epithelial cell | 4 studies | 37% ± 11% | |
microglial cell | 4 studies | 57% ± 28% | |
cardiac muscle cell | 4 studies | 50% ± 25% | |
muscle cell | 4 studies | 37% ± 12% | |
ciliated cell | 4 studies | 33% ± 16% | |
type II pneumocyte | 4 studies | 30% ± 10% | |
cholangiocyte | 3 studies | 45% ± 17% | |
endothelial cell of sinusoid | 3 studies | 33% ± 12% | |
hepatic stellate cell | 3 studies | 65% ± 5% | |
glomerular endothelial cell | 3 studies | 37% ± 1% | |
GABAergic interneuron | 3 studies | 82% ± 6% | |
glial cell | 3 studies | 46% ± 3% | |
endocardial cell | 3 studies | 62% ± 29% | |
retinal pigment epithelial cell | 3 studies | 57% ± 14% | |
adventitial cell | 3 studies | 56% ± 25% | |
respiratory goblet cell | 3 studies | 39% ± 5% | |
chondrocyte | 3 studies | 24% ± 6% | |
Schwann cell | 3 studies | 53% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5066.13 | 653 / 653 | 99% | 11.53 | 597 / 605 |
adrenal gland | 99% | 2217.44 | 256 / 258 | 88% | 8.30 | 202 / 230 |
prostate | 99% | 2615.89 | 243 / 245 | 88% | 2.57 | 440 / 502 |
breast | 100% | 4547.89 | 459 / 459 | 81% | 2.80 | 909 / 1118 |
lung | 100% | 4101.94 | 576 / 578 | 76% | 2.46 | 882 / 1155 |
kidney | 89% | 1379.74 | 79 / 89 | 80% | 4.01 | 718 / 901 |
skin | 84% | 1700.20 | 1526 / 1809 | 79% | 5.98 | 372 / 472 |
brain | 62% | 664.76 | 1638 / 2642 | 94% | 3.31 | 663 / 705 |
uterus | 99% | 2900.01 | 168 / 170 | 50% | 1.67 | 231 / 459 |
esophagus | 79% | 2102.99 | 1142 / 1445 | 70% | 2.00 | 128 / 183 |
ovary | 100% | 3792.55 | 180 / 180 | 40% | 0.86 | 174 / 430 |
bladder | 100% | 2952.24 | 21 / 21 | 30% | 0.94 | 152 / 504 |
intestine | 90% | 2248.21 | 871 / 966 | 23% | 0.63 | 119 / 527 |
pancreas | 16% | 147.89 | 54 / 328 | 87% | 2.89 | 155 / 178 |
adipose | 100% | 5546.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6831.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
stomach | 56% | 1219.41 | 202 / 359 | 43% | 1.34 | 123 / 286 |
muscle | 97% | 1712.89 | 781 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 2300.59 | 835 / 861 | 0% | 0 | 0 / 0 |
spleen | 96% | 1835.46 | 231 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 42% | 0.91 | 19 / 45 |
liver | 24% | 229.16 | 55 / 226 | 16% | 0.36 | 66 / 406 |
lymph node | 0% | 0 | 0 / 0 | 31% | 0.44 | 9 / 29 |
eye | 0% | 0 | 0 / 0 | 8% | 0.18 | 6 / 80 |
peripheral blood | 1% | 9.48 | 10 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0002357 | Biological process | defense response to tumor cell |
GO_0010628 | Biological process | positive regulation of gene expression |
GO_0090090 | Biological process | negative regulation of canonical Wnt signaling pathway |
GO_0010629 | Biological process | negative regulation of gene expression |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0008143 | Molecular function | poly(A) binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0008266 | Molecular function | poly(U) RNA binding |
GO_0035925 | Molecular function | mRNA 3'-UTR AU-rich region binding |
Gene name | RBMS3 |
Protein name | RNA-binding motif, single-stranded-interacting protein 3 RNA binding motif single stranded interacting protein 3 |
Synonyms | |
Description | FUNCTION: Binds poly(A) and poly(U) oligoribonucleotides. . |
Accessions | ENST00000452462.5 [Q6XE24-5] ENST00000456853.1 [Q6XE24-2] A0A1B0GUW5 ENST00000434693.6 A0A1B0GTI7 ENST00000383766.6 [Q6XE24-3] C9J9B2 C9JIJ9 ENST00000383767.7 [Q6XE24-1] ENST00000637842.1 ENST00000636680.2 Q6XE24 ENST00000273139.13 [Q6XE24-4] ENST00000445033.5 |