Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 23 studies | 34% ± 17% | |
pericyte | 17 studies | 31% ± 12% | |
macrophage | 14 studies | 34% ± 17% | |
fibroblast | 12 studies | 32% ± 11% | |
astrocyte | 11 studies | 32% ± 15% | |
microglial cell | 11 studies | 34% ± 11% | |
oligodendrocyte precursor cell | 10 studies | 32% ± 15% | |
GABAergic neuron | 9 studies | 45% ± 22% | |
glutamatergic neuron | 9 studies | 54% ± 23% | |
smooth muscle cell | 8 studies | 27% ± 8% | |
adipocyte | 7 studies | 22% ± 5% | |
endothelial cell of lymphatic vessel | 7 studies | 29% ± 8% | |
myeloid cell | 7 studies | 27% ± 6% | |
interneuron | 6 studies | 52% ± 22% | |
neuron | 5 studies | 41% ± 19% | |
ciliated cell | 5 studies | 29% ± 8% | |
epithelial cell | 5 studies | 32% ± 19% | |
type I pneumocyte | 5 studies | 36% ± 6% | |
type II pneumocyte | 5 studies | 25% ± 3% | |
cardiac muscle cell | 4 studies | 25% ± 6% | |
mesothelial cell | 4 studies | 35% ± 12% | |
Mueller cell | 4 studies | 35% ± 10% | |
retina horizontal cell | 4 studies | 26% ± 8% | |
hepatocyte | 4 studies | 61% ± 18% | |
club cell | 4 studies | 32% ± 8% | |
basal cell | 4 studies | 35% ± 27% | |
oligodendrocyte | 4 studies | 28% ± 12% | |
GABAergic interneuron | 3 studies | 32% ± 10% | |
granule cell | 3 studies | 33% ± 11% | |
dendritic cell | 3 studies | 32% ± 1% | |
vein endothelial cell | 3 studies | 31% ± 12% | |
GABAergic amacrine cell | 3 studies | 27% ± 2% | |
endothelial cell of vascular tree | 3 studies | 34% ± 10% | |
amacrine cell | 3 studies | 27% ± 5% | |
alveolar macrophage | 3 studies | 19% ± 2% | |
monocyte | 3 studies | 25% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 99% | 246.81 | 1424 / 1445 | 95% | 3.65 | 174 / 183 |
lung | 100% | 662.96 | 578 / 578 | 78% | 2.33 | 900 / 1155 |
breast | 100% | 630.67 | 459 / 459 | 75% | 2.73 | 843 / 1118 |
stomach | 90% | 219.56 | 324 / 359 | 79% | 2.50 | 227 / 286 |
intestine | 98% | 219.31 | 949 / 966 | 60% | 1.46 | 316 / 527 |
thymus | 100% | 647.20 | 653 / 653 | 56% | 1.63 | 338 / 605 |
skin | 100% | 510.01 | 1802 / 1809 | 54% | 1.16 | 255 / 472 |
prostate | 98% | 267.68 | 241 / 245 | 51% | 1.16 | 255 / 502 |
bladder | 100% | 274.38 | 21 / 21 | 42% | 0.88 | 214 / 504 |
pancreas | 73% | 100.80 | 239 / 328 | 69% | 1.58 | 123 / 178 |
liver | 99% | 644.97 | 223 / 226 | 41% | 0.98 | 168 / 406 |
kidney | 96% | 235.76 | 85 / 89 | 42% | 0.91 | 375 / 901 |
uterus | 99% | 235.68 | 168 / 170 | 33% | 0.60 | 151 / 459 |
adrenal gland | 96% | 192.75 | 248 / 258 | 15% | 0.24 | 34 / 230 |
adipose | 100% | 464.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 443.91 | 1332 / 1335 | 0% | 0 | 0 / 0 |
brain | 54% | 66.69 | 1430 / 2642 | 42% | 0.74 | 298 / 705 |
spleen | 96% | 291.47 | 232 / 241 | 0% | 0 | 0 / 0 |
muscle | 91% | 187.30 | 730 / 803 | 0% | 0 | 0 / 0 |
heart | 90% | 200.36 | 777 / 861 | 0% | 0 | 0 / 0 |
ovary | 67% | 98.18 | 121 / 180 | 17% | 0.26 | 75 / 430 |
tonsil | 0% | 0 | 0 / 0 | 56% | 1.40 | 25 / 45 |
peripheral blood | 5% | 4.70 | 43 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.04 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048675 | Biological process | axon extension |
GO_0007165 | Biological process | signal transduction |
GO_0030175 | Cellular component | filopodium |
GO_0005856 | Cellular component | cytoskeleton |
GO_0016604 | Cellular component | nuclear body |
GO_0005829 | Cellular component | cytosol |
GO_0030027 | Cellular component | lamellipodium |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | RAPH1 |
Protein name | Ras-associated and pleckstrin homology domains-containing protein 1 (RAPH1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 18 protein) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 9 protein) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 |
Synonyms | hCG_2043066 KIAA1681 LPD PREL2 RMO1 ALS2CR18 ALS2CR9 |
Description | FUNCTION: Mediator of localized membrane signals. Implicated in the regulation of lamellipodial dynamics. Negatively regulates cell adhesion. |
Accessions | C9K0J5 ENST00000418114.5 [Q70E73-2] ENST00000453034.5 [Q70E73-6] ENST00000419464.5 [Q70E73-5] ENST00000420371.2 ENST00000630330.2 C9JLG4 C9J0R8 C9J164 ENST00000428637.5 ENST00000308091.8 [Q70E73-9] ENST00000319170.10 [Q70E73-10] ENST00000423104.5 [Q70E73-7] ENST00000374493.7 Q70E73 ENST00000457812.5 ENST00000439222.5 [Q70E73-8] |