Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 4342.22 | 459 / 459 | 100% | 52.26 | 1118 / 1118 |
esophagus | 100% | 4592.20 | 1445 / 1445 | 100% | 49.38 | 183 / 183 |
liver | 100% | 3032.38 | 226 / 226 | 100% | 19.97 | 406 / 406 |
lung | 100% | 5056.84 | 577 / 578 | 100% | 38.53 | 1155 / 1155 |
prostate | 100% | 4811.94 | 245 / 245 | 100% | 32.58 | 501 / 502 |
uterus | 100% | 5366.92 | 170 / 170 | 100% | 36.58 | 458 / 459 |
thymus | 100% | 4628.46 | 653 / 653 | 100% | 22.86 | 602 / 605 |
bladder | 100% | 4796.29 | 21 / 21 | 99% | 32.40 | 501 / 504 |
ovary | 100% | 3306.62 | 180 / 180 | 99% | 19.88 | 426 / 430 |
stomach | 100% | 4326.30 | 359 / 359 | 99% | 26.81 | 283 / 286 |
intestine | 100% | 4301.61 | 966 / 966 | 98% | 26.27 | 517 / 527 |
pancreas | 98% | 2248.35 | 322 / 328 | 99% | 25.41 | 176 / 178 |
skin | 100% | 4617.11 | 1809 / 1809 | 96% | 26.73 | 453 / 472 |
brain | 95% | 1883.62 | 2507 / 2642 | 100% | 18.84 | 702 / 705 |
kidney | 100% | 2476.16 | 89 / 89 | 94% | 15.28 | 848 / 901 |
adrenal gland | 100% | 3974.34 | 258 / 258 | 85% | 13.05 | 196 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.74 | 29 / 29 |
muscle | 100% | 15137.68 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4680.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.30 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.20 | 1 / 1 |
blood vessel | 100% | 3842.57 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 3526.53 | 1203 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3395.27 | 917 / 929 | 0% | 0 | 0 / 0 |
heart | 96% | 5039.29 | 823 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 81% | 16.11 | 65 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006974 | Biological process | DNA damage response |
GO_0010499 | Biological process | proteasomal ubiquitin-independent protein catabolic process |
GO_0035092 | Biological process | sperm DNA condensation |
GO_0006281 | Biological process | DNA repair |
GO_0016607 | Cellular component | nuclear speck |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_1990111 | Cellular component | spermatoproteasome complex |
GO_0005634 | Cellular component | nucleus |
GO_0070577 | Molecular function | lysine-acetylated histone binding |
GO_0070628 | Molecular function | proteasome binding |
GO_0016504 | Molecular function | peptidase activator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | PSME4 |
Protein name | Proteasome activator subunit 4 Proteasome activator complex subunit 4 (Proteasome activator PA200) Proteasome activator complex subunit 4 |
Synonyms | KIAA0077 |
Description | FUNCTION: Associated component of the proteasome that specifically recognizes acetylated histones and promotes ATP- and ubiquitin-independent degradation of core histones during spermatogenesis and DNA damage response. Recognizes and binds acetylated histones via its bromodomain-like (BRDL) region and activates the proteasome by opening the gated channel for substrate entry. Binds to the core proteasome via its C-terminus, which occupies the same binding sites as the proteasomal ATPases, opening the closed structure of the proteasome via an active gating mechanism. Component of the spermatoproteasome, a form of the proteasome specifically found in testis: binds to acetylated histones and promotes degradation of histones, thereby participating actively to the exchange of histones during spermatogenesis. Also involved in DNA damage response in somatic cells, by promoting degradation of histones following DNA double-strand breaks. . |
Accessions | G1UI18 ENST00000404125.6 [Q14997-1] Q14997 F8WBH5 ENST00000389993.7 |