Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 19 studies | 62% ± 19% | |
endothelial cell | 18 studies | 36% ± 21% | |
fibroblast | 18 studies | 38% ± 18% | |
oligodendrocyte | 15 studies | 62% ± 14% | |
oligodendrocyte precursor cell | 15 studies | 66% ± 19% | |
macrophage | 13 studies | 39% ± 15% | |
pericyte | 13 studies | 31% ± 15% | |
microglial cell | 13 studies | 38% ± 14% | |
glutamatergic neuron | 12 studies | 70% ± 18% | |
ciliated cell | 11 studies | 35% ± 18% | |
GABAergic neuron | 11 studies | 43% ± 21% | |
neuron | 8 studies | 54% ± 20% | |
basal cell | 8 studies | 38% ± 22% | |
epithelial cell | 7 studies | 30% ± 9% | |
retinal ganglion cell | 7 studies | 76% ± 18% | |
retinal cone cell | 7 studies | 53% ± 19% | |
smooth muscle cell | 7 studies | 34% ± 15% | |
interneuron | 6 studies | 47% ± 13% | |
adipocyte | 6 studies | 31% ± 10% | |
cardiac muscle cell | 6 studies | 74% ± 18% | |
Mueller cell | 6 studies | 31% ± 9% | |
OFF-bipolar cell | 5 studies | 61% ± 24% | |
club cell | 5 studies | 27% ± 10% | |
amacrine cell | 5 studies | 42% ± 25% | |
retinal rod cell | 5 studies | 31% ± 8% | |
myeloid cell | 5 studies | 37% ± 12% | |
cholangiocyte | 4 studies | 47% ± 25% | |
hepatocyte | 4 studies | 75% ± 22% | |
glial cell | 4 studies | 34% ± 15% | |
granule cell | 4 studies | 68% ± 12% | |
retinal pigment epithelial cell | 4 studies | 46% ± 15% | |
dendritic cell | 4 studies | 27% ± 6% | |
respiratory goblet cell | 4 studies | 41% ± 18% | |
ionocyte | 3 studies | 38% ± 8% | |
hepatic stellate cell | 3 studies | 55% ± 22% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 65% ± 6% | |
retinal bipolar neuron | 3 studies | 22% ± 0% | |
GABAergic interneuron | 3 studies | 37% ± 12% | |
Purkinje cell | 3 studies | 65% ± 22% | |
progenitor cell | 3 studies | 43% ± 5% | |
squamous epithelial cell | 3 studies | 42% ± 20% | |
GABAergic amacrine cell | 3 studies | 28% ± 10% | |
ON-bipolar cell | 3 studies | 48% ± 36% | |
glycinergic amacrine cell | 3 studies | 67% ± 20% | |
endothelial cell of vascular tree | 3 studies | 16% ± 0% | |
abnormal cell | 3 studies | 29% ± 15% | |
connective tissue cell | 3 studies | 36% ± 15% | |
ependymal cell | 3 studies | 70% ± 13% | |
alveolar macrophage | 3 studies | 42% ± 6% | |
chondrocyte | 3 studies | 41% ± 15% | |
myofibroblast cell | 3 studies | 28% ± 14% | |
type II pneumocyte | 3 studies | 25% ± 5% | |
transit amplifying cell | 3 studies | 33% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 15633.88 | 2628 / 2642 | 99% | 24.61 | 700 / 705 |
prostate | 89% | 1759.11 | 217 / 245 | 88% | 8.87 | 444 / 502 |
lung | 81% | 1483.06 | 470 / 578 | 91% | 9.76 | 1051 / 1155 |
stomach | 96% | 2446.55 | 343 / 359 | 75% | 6.34 | 215 / 286 |
pancreas | 81% | 1347.67 | 266 / 328 | 88% | 7.47 | 157 / 178 |
uterus | 93% | 3075.01 | 158 / 170 | 71% | 6.11 | 326 / 459 |
thymus | 68% | 1048.20 | 442 / 653 | 90% | 23.10 | 542 / 605 |
esophagus | 62% | 1213.33 | 898 / 1445 | 95% | 11.96 | 173 / 183 |
liver | 95% | 2570.70 | 215 / 226 | 61% | 4.95 | 247 / 406 |
adrenal gland | 100% | 8285.81 | 258 / 258 | 53% | 7.43 | 121 / 230 |
intestine | 78% | 1476.34 | 750 / 966 | 72% | 5.11 | 378 / 527 |
skin | 89% | 2680.43 | 1604 / 1809 | 52% | 4.94 | 244 / 472 |
breast | 49% | 749.38 | 227 / 459 | 79% | 18.50 | 885 / 1118 |
ovary | 98% | 7430.62 | 177 / 180 | 26% | 1.40 | 112 / 430 |
bladder | 52% | 1206.90 | 11 / 21 | 71% | 5.73 | 357 / 504 |
spleen | 99% | 3214.64 | 239 / 241 | 0% | 0 | 0 / 0 |
heart | 95% | 4962.96 | 815 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 80% | 8.94 | 36 / 45 |
kidney | 34% | 518.20 | 30 / 89 | 33% | 2.60 | 295 / 901 |
adipose | 50% | 724.61 | 599 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 49% | 3.03 | 39 / 80 |
blood vessel | 46% | 767.17 | 613 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.24 | 1 / 29 |
muscle | 0% | 3.35 | 2 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 2.40 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032012 | Biological process | regulation of ARF protein signal transduction |
GO_0014069 | Cellular component | postsynaptic density |
GO_0032587 | Cellular component | ruffle membrane |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
Gene name | PSD3 |
Protein name | Pleckstrin and Sec7 domain containing 3 PH and SEC7 domain-containing protein 3 (Epididymis tissue protein Li 20mP) (Exchange factor for ADP-ribosylation factor guanine nucleotide factor 6 D) (Exchange factor for ARF6 D) (Hepatocellular carcinoma-associated antigen 67) (Pleckstrin homology and SEC7 domain-containing protein 3) Pleckstrin and Sec7 domain containing 3 (cDNA FLJ54694, highly similar to Pleckstrin and Sec7 domain-containing protein3) HCG1785781 (PSD3 protein) (cDNA, FLJ94448) |
Synonyms | KIAA0942 EFA6D EFA6R HCA67 hCG_1785781 hCG_28251 |
Description | FUNCTION: Guanine nucleotide exchange factor for ARF6. . |
Accessions | Q9NYI0 ENST00000286485.12 [Q9NYI0-3] ENST00000518315.5 B4DKF8 Q7L3Y3 ENST00000428502.6 ENST00000327040.13 [Q9NYI0-2] ENST00000517971.5 ENST00000520858.5 H0YC20 E5RJ29 E5RFG7 ENST00000521475.1 E5RH02 ENST00000519851.5 H0YAQ7 ENST00000523619.5 E5RIH3 E5RJE4 ENST00000521027.5 |