Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 27% ± 12% | |
astrocyte | 11 studies | 29% ± 13% | |
adipocyte | 9 studies | 26% ± 4% | |
fibroblast | 9 studies | 24% ± 11% | |
microglial cell | 7 studies | 22% ± 8% | |
oligodendrocyte precursor cell | 7 studies | 25% ± 12% | |
glutamatergic neuron | 6 studies | 29% ± 13% | |
interneuron | 6 studies | 37% ± 24% | |
oligodendrocyte | 6 studies | 27% ± 8% | |
natural killer cell | 5 studies | 16% ± 1% | |
epithelial cell | 5 studies | 32% ± 8% | |
ciliated cell | 5 studies | 24% ± 4% | |
endothelial cell of lymphatic vessel | 5 studies | 23% ± 6% | |
pericyte | 5 studies | 23% ± 7% | |
macrophage | 5 studies | 23% ± 8% | |
basal cell | 5 studies | 26% ± 9% | |
GABAergic neuron | 5 studies | 29% ± 11% | |
neuron | 4 studies | 20% ± 5% | |
cardiac muscle cell | 4 studies | 24% ± 1% | |
lymphocyte | 4 studies | 24% ± 5% | |
dendritic cell | 4 studies | 22% ± 7% | |
smooth muscle cell | 4 studies | 22% ± 2% | |
B cell | 3 studies | 20% ± 3% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 16% ± 1% | |
GABAergic interneuron | 3 studies | 21% ± 2% | |
plasma cell | 3 studies | 25% ± 7% | |
amacrine cell | 3 studies | 20% ± 3% | |
myeloid cell | 3 studies | 20% ± 1% | |
Mueller cell | 3 studies | 18% ± 1% | |
retinal rod cell | 3 studies | 20% ± 2% | |
abnormal cell | 3 studies | 27% ± 11% | |
connective tissue cell | 3 studies | 17% ± 2% | |
T cell | 3 studies | 17% ± 1% | |
monocyte | 3 studies | 19% ± 2% | |
type I pneumocyte | 3 studies | 22% ± 6% | |
type II pneumocyte | 3 studies | 21% ± 6% | |
granule cell | 3 studies | 23% ± 6% | |
mucus secreting cell | 3 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2025.73 | 1445 / 1445 | 100% | 17.31 | 183 / 183 |
ovary | 100% | 2393.32 | 180 / 180 | 100% | 19.87 | 430 / 430 |
pancreas | 100% | 1171.20 | 328 / 328 | 100% | 26.21 | 178 / 178 |
skin | 100% | 2540.75 | 1809 / 1809 | 100% | 29.62 | 472 / 472 |
thymus | 100% | 3050.76 | 653 / 653 | 100% | 33.80 | 605 / 605 |
uterus | 100% | 2754.37 | 170 / 170 | 100% | 31.73 | 459 / 459 |
brain | 100% | 2472.93 | 2639 / 2642 | 100% | 44.48 | 705 / 705 |
bladder | 100% | 2198.38 | 21 / 21 | 100% | 28.94 | 503 / 504 |
prostate | 100% | 3493.83 | 245 / 245 | 100% | 32.66 | 501 / 502 |
lung | 100% | 1841.33 | 577 / 578 | 100% | 23.92 | 1154 / 1155 |
breast | 100% | 2296.22 | 459 / 459 | 100% | 25.74 | 1115 / 1118 |
kidney | 100% | 2684.02 | 89 / 89 | 100% | 27.18 | 898 / 901 |
adrenal gland | 100% | 2575.80 | 258 / 258 | 100% | 29.84 | 229 / 230 |
intestine | 100% | 2323.87 | 966 / 966 | 99% | 19.26 | 524 / 527 |
stomach | 100% | 2147.07 | 359 / 359 | 99% | 16.51 | 284 / 286 |
liver | 100% | 1182.97 | 226 / 226 | 99% | 17.47 | 403 / 406 |
adipose | 100% | 2087.10 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 49.44 | 29 / 29 |
spleen | 100% | 3224.85 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.99 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 27.60 | 1 / 1 |
blood vessel | 100% | 1848.02 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1181.17 | 852 / 861 | 0% | 0 | 0 / 0 |
muscle | 99% | 1088.24 | 794 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 19.48 | 79 / 80 |
peripheral blood | 95% | 1289.92 | 887 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008380 | Biological process | RNA splicing |
GO_0006469 | Biological process | negative regulation of protein kinase activity |
GO_0006397 | Biological process | mRNA processing |
GO_0003014 | Biological process | renal system process |
GO_0042326 | Biological process | negative regulation of phosphorylation |
GO_0005730 | Cellular component | nucleolus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0003725 | Molecular function | double-stranded RNA binding |
GO_0004860 | Molecular function | protein kinase inhibitor activity |
GO_0019901 | Molecular function | protein kinase binding |
GO_0005515 | Molecular function | protein binding |
Gene name | PRKRIP1 |
Protein name | PRKR-interacting protein 1 |
Synonyms | |
Description | FUNCTION: Required for pre-mRNA splicing as component of the spliceosome . Binds double-stranded RNA. Inhibits EIF2AK2 kinase activity (By similarity). . |
Accessions | ENST00000496391.5 [Q9H875-1] ENST00000397912.3 [Q9H875-1] Q9H875 |