Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 27% ± 12% | |
classical monocyte | 17 studies | 25% ± 11% | |
fibroblast | 15 studies | 26% ± 13% | |
pericyte | 15 studies | 23% ± 9% | |
macrophage | 15 studies | 27% ± 14% | |
oligodendrocyte | 12 studies | 31% ± 11% | |
microglial cell | 12 studies | 42% ± 16% | |
oligodendrocyte precursor cell | 11 studies | 34% ± 16% | |
smooth muscle cell | 10 studies | 18% ± 3% | |
GABAergic neuron | 9 studies | 36% ± 19% | |
monocyte | 7 studies | 26% ± 9% | |
glutamatergic neuron | 7 studies | 42% ± 23% | |
myeloid cell | 7 studies | 34% ± 10% | |
dendritic cell | 7 studies | 25% ± 10% | |
non-classical monocyte | 6 studies | 28% ± 7% | |
neuron | 6 studies | 37% ± 15% | |
interneuron | 6 studies | 39% ± 21% | |
epithelial cell | 6 studies | 28% ± 8% | |
retina horizontal cell | 5 studies | 32% ± 16% | |
cardiac muscle cell | 5 studies | 30% ± 7% | |
neutrophil | 4 studies | 27% ± 3% | |
retinal cone cell | 4 studies | 26% ± 7% | |
adipocyte | 4 studies | 21% ± 5% | |
mononuclear phagocyte | 4 studies | 25% ± 5% | |
astrocyte | 4 studies | 29% ± 6% | |
basal cell | 4 studies | 22% ± 6% | |
GABAergic interneuron | 3 studies | 22% ± 7% | |
glial cell | 3 studies | 22% ± 6% | |
retinal pigment epithelial cell | 3 studies | 30% ± 12% | |
ciliated cell | 3 studies | 20% ± 3% | |
ON-bipolar cell | 3 studies | 22% ± 6% | |
glycinergic amacrine cell | 3 studies | 30% ± 6% | |
retinal rod cell | 3 studies | 35% ± 8% | |
rod bipolar cell | 3 studies | 32% ± 9% | |
type II pneumocyte | 3 studies | 21% ± 3% | |
pancreatic A cell | 3 studies | 26% ± 8% | |
pancreatic ductal cell | 3 studies | 33% ± 11% | |
abnormal cell | 3 studies | 25% ± 4% | |
myofibroblast cell | 3 studies | 24% ± 3% | |
alveolar macrophage | 3 studies | 27% ± 8% | |
Schwann cell | 3 studies | 38% ± 12% | |
transit amplifying cell | 3 studies | 22% ± 5% | |
goblet cell | 3 studies | 17% ± 2% | |
granule cell | 3 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 17039.98 | 578 / 578 | 100% | 85.32 | 1154 / 1155 |
kidney | 100% | 13404.10 | 89 / 89 | 100% | 106.99 | 900 / 901 |
thymus | 100% | 11135.75 | 652 / 653 | 100% | 99.30 | 605 / 605 |
skin | 100% | 9388.10 | 1806 / 1809 | 100% | 179.32 | 472 / 472 |
uterus | 100% | 10577.89 | 170 / 170 | 100% | 87.75 | 458 / 459 |
stomach | 100% | 9527.67 | 359 / 359 | 100% | 76.92 | 285 / 286 |
breast | 100% | 13590.70 | 459 / 459 | 100% | 81.90 | 1114 / 1118 |
intestine | 100% | 10640.40 | 966 / 966 | 100% | 83.72 | 525 / 527 |
liver | 100% | 8421.63 | 225 / 226 | 100% | 64.44 | 406 / 406 |
ovary | 99% | 8261.18 | 179 / 180 | 100% | 79.19 | 430 / 430 |
prostate | 100% | 10714.28 | 244 / 245 | 100% | 68.35 | 500 / 502 |
bladder | 100% | 12564.95 | 21 / 21 | 99% | 83.09 | 499 / 504 |
esophagus | 99% | 10796.38 | 1427 / 1445 | 100% | 68.81 | 183 / 183 |
brain | 97% | 5920.82 | 2552 / 2642 | 100% | 147.34 | 705 / 705 |
adrenal gland | 100% | 10499.25 | 258 / 258 | 93% | 55.31 | 214 / 230 |
pancreas | 82% | 3671.43 | 269 / 328 | 100% | 126.00 | 178 / 178 |
eye | 0% | 0 | 0 / 0 | 100% | 88.03 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 55.63 | 29 / 29 |
spleen | 100% | 15389.18 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 61.62 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 43.12 | 1 / 1 |
blood vessel | 100% | 18698.23 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 14326.96 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 19455.92 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 8867.51 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 33364.11 | 810 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007283 | Biological process | spermatogenesis |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0031519 | Cellular component | PcG protein complex |
GO_0000792 | Cellular component | heterochromatin |
GO_0035102 | Cellular component | PRC1 complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0042393 | Molecular function | histone binding |
GO_0003682 | Molecular function | chromatin binding |
Gene name | PHC2 |
Protein name | PHC2 protein Polyhomeotic homolog 2 Polyhomeotic-like protein 2 (hPH2) (Early development regulatory protein 2) |
Synonyms | PH2 EDR2 |
Description | FUNCTION: Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. |
Accessions | ENST00000485928.5 A0A8I5KY19 A0A994J5J9 A0A8I5KPD5 ENST00000486897.5 ENST00000373418.7 [Q8IXK0-2] ENST00000683057.1 [Q8IXK0-5] Q8IXK0 ENST00000493483.5 ENST00000706360.1 B7ZLY0 ENST00000373422.8 A0A0A0MSI2 ENST00000467894.5 ENST00000257118.5 [Q8IXK0-1] ENST00000431992.6 |