Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| basal cell | 8 studies | 30% ± 12% | |
| oligodendrocyte | 7 studies | 23% ± 8% | |
| epithelial cell | 5 studies | 26% ± 12% | |
| GABAergic neuron | 3 studies | 23% ± 5% | |
| glutamatergic neuron | 3 studies | 33% ± 11% | |
| goblet cell | 3 studies | 35% ± 8% | |
| interneuron | 3 studies | 19% ± 2% | |
| oligodendrocyte precursor cell | 3 studies | 23% ± 1% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 5 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 92% | 4255.42 | 2440 / 2642 | 82% | 32.28 | 579 / 705 |
| prostate | 85% | 3717.34 | 209 / 245 | 80% | 20.74 | 403 / 502 |
| bladder | 67% | 3266.52 | 14 / 21 | 92% | 115.99 | 466 / 504 |
| pancreas | 91% | 2183.06 | 297 / 328 | 66% | 31.53 | 118 / 178 |
| esophagus | 41% | 11768.01 | 596 / 1445 | 96% | 156.71 | 176 / 183 |
| breast | 51% | 1525.64 | 236 / 459 | 82% | 28.91 | 918 / 1118 |
| intestine | 40% | 1008.78 | 382 / 966 | 91% | 45.52 | 477 / 527 |
| skin | 78% | 15818.94 | 1412 / 1809 | 37% | 12.88 | 173 / 472 |
| uterus | 19% | 396.34 | 32 / 170 | 88% | 115.83 | 402 / 459 |
| ureter | 0% | 0 | 0 / 0 | 100% | 125.37 | 1 / 1 |
| tonsil | 0% | 0 | 0 / 0 | 98% | 164.66 | 44 / 45 |
| stomach | 11% | 182.46 | 38 / 359 | 86% | 39.99 | 246 / 286 |
| lung | 12% | 199.92 | 70 / 578 | 77% | 111.64 | 889 / 1155 |
| adrenal gland | 14% | 271.36 | 37 / 258 | 59% | 23.15 | 135 / 230 |
| ovary | 6% | 140.70 | 11 / 180 | 47% | 12.82 | 201 / 430 |
| eye | 0% | 0 | 0 / 0 | 41% | 9.26 | 33 / 80 |
| kidney | 20% | 343.99 | 18 / 89 | 13% | 3.49 | 120 / 901 |
| heart | 26% | 554.66 | 223 / 861 | 0% | 0 | 0 / 0 |
| thymus | 1% | 22.15 | 9 / 653 | 21% | 12.05 | 127 / 605 |
| liver | 8% | 128.21 | 17 / 226 | 15% | 3.97 | 60 / 406 |
| lymph node | 0% | 0 | 0 / 0 | 21% | 10.12 | 6 / 29 |
| spleen | 18% | 310.00 | 44 / 241 | 0% | 0 | 0 / 0 |
| peripheral blood | 15% | 443.81 | 143 / 929 | 0% | 0 | 0 / 0 |
| adipose | 9% | 154.53 | 108 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 6% | 99.28 | 81 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 0% | 7.29 | 2 / 803 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_1902414 | Biological process | protein localization to cell junction |
| GO_0060041 | Biological process | retina development in camera-type eye |
| GO_0007155 | Biological process | cell adhesion |
| GO_0006826 | Biological process | iron ion transport |
| GO_0006955 | Biological process | immune response |
| GO_0046718 | Biological process | symbiont entry into host cell |
| GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO_0002934 | Biological process | desmosome organization |
| GO_0051963 | Biological process | regulation of synapse assembly |
| GO_0002089 | Biological process | lens morphogenesis in camera-type eye |
| GO_0070166 | Biological process | enamel mineralization |
| GO_0098609 | Biological process | cell-cell adhesion |
| GO_0007157 | Biological process | heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules |
| GO_0007411 | Biological process | axon guidance |
| GO_0005576 | Cellular component | extracellular region |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0016020 | Cellular component | membrane |
| GO_0048787 | Cellular component | presynaptic active zone membrane |
| GO_0098686 | Cellular component | hippocampal mossy fiber to CA3 synapse |
| GO_0044291 | Cellular component | cell-cell contact zone |
| GO_0030425 | Cellular component | dendrite |
| GO_0043296 | Cellular component | apical junction complex |
| GO_0005912 | Cellular component | adherens junction |
| GO_0032584 | Cellular component | growth cone membrane |
| GO_0015026 | Molecular function | coreceptor activity |
| GO_0042803 | Molecular function | protein homodimerization activity |
| GO_0044877 | Molecular function | protein-containing complex binding |
| GO_0030246 | Molecular function | carbohydrate binding |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0001618 | Molecular function | virus receptor activity |
| GO_0050839 | Molecular function | cell adhesion molecule binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0046790 | Molecular function | virion binding |
| Gene name | NECTIN1 |
| Protein name | Nectin cell adhesion molecule 1 Nectin-1 Poliovirus receptor-related 1 Poliovirus receptor-related 1 beta isoform Poliovirus receptor-related 1 alpha isoform Nectin-1 (Herpes virus entry mediator C) (Herpesvirus entry mediator C) (HveC) (Herpesvirus Ig-like receptor) (HIgR) (Nectin cell adhesion molecule 1) (Poliovirus receptor-related protein 1) (CD antigen CD111) |
| Synonyms | PRR1 PVRL1 HVEC |
| Description | FUNCTION: Promotes cell-cell contacts by forming homophilic or heterophilic trans-dimers. Heterophilic interactions have been detected between NECTIN1 and NECTIN3 and between NECTIN1 and NECTIN4. Has some neurite outgrowth-promoting activity. .; FUNCTION: (Microbial infection) Acts as a receptor for herpes simplex virus 1/HHV-1, herpes simplex virus 2/HHV-2, and pseudorabies virus/PRV. . |
| Accessions | Q8WXR2 Q8WXR3 ENST00000264025.8 [Q15223-1] Q6SYC0 Q15223 A0A8V8TKI1 ENST00000340882.2 [Q15223-3] Q6SYC2 Q6SYC1 ENST00000531468.2 |
