Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6600.89 | 1445 / 1445 | 100% | 49.60 | 183 / 183 |
intestine | 100% | 9714.05 | 966 / 966 | 100% | 30.11 | 527 / 527 |
prostate | 100% | 9355.32 | 245 / 245 | 100% | 23.74 | 502 / 502 |
uterus | 100% | 9823.46 | 170 / 170 | 100% | 38.39 | 459 / 459 |
skin | 100% | 6854.71 | 1808 / 1809 | 100% | 82.20 | 472 / 472 |
breast | 100% | 7402.94 | 459 / 459 | 99% | 34.71 | 1111 / 1118 |
ovary | 100% | 4885.69 | 180 / 180 | 99% | 41.84 | 427 / 430 |
stomach | 100% | 5868.18 | 359 / 359 | 99% | 35.77 | 284 / 286 |
lung | 100% | 14806.11 | 578 / 578 | 99% | 32.93 | 1146 / 1155 |
bladder | 100% | 9865.71 | 21 / 21 | 99% | 34.15 | 500 / 504 |
thymus | 100% | 6239.96 | 651 / 653 | 99% | 23.68 | 598 / 605 |
adrenal gland | 100% | 7897.95 | 258 / 258 | 98% | 28.72 | 225 / 230 |
brain | 97% | 5939.29 | 2562 / 2642 | 100% | 46.58 | 704 / 705 |
kidney | 98% | 4391.39 | 87 / 89 | 97% | 25.42 | 870 / 901 |
liver | 99% | 3534.22 | 223 / 226 | 96% | 17.85 | 388 / 406 |
pancreas | 87% | 2661.15 | 286 / 328 | 99% | 35.51 | 176 / 178 |
adipose | 100% | 8722.27 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 91.70 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 71.10 | 29 / 29 |
spleen | 100% | 24245.14 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.61 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 30.62 | 1 / 1 |
blood vessel | 100% | 13887.21 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 18576.27 | 924 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 4570.95 | 841 / 861 | 0% | 0 | 0 / 0 |
muscle | 54% | 1355.05 | 431 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032011 | Biological process | ARF protein signal transduction |
GO_0072673 | Biological process | lamellipodium morphogenesis |
GO_0030048 | Biological process | actin filament-based movement |
GO_0035385 | Biological process | Roundabout signaling pathway |
GO_0051056 | Biological process | regulation of small GTPase mediated signal transduction |
GO_0035023 | Biological process | regulation of Rho protein signal transduction |
GO_0007266 | Biological process | Rho protein signal transduction |
GO_0001726 | Cellular component | ruffle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005884 | Cellular component | actin filament |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0098871 | Cellular component | postsynaptic actin cytoskeleton |
GO_0005737 | Cellular component | cytoplasm |
GO_0030027 | Cellular component | lamellipodium |
GO_0016459 | Cellular component | myosin complex |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0043531 | Molecular function | ADP binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005096 | Molecular function | GTPase activator activity |
GO_0048495 | Molecular function | Roundabout binding |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | MYO9B |
Protein name | MYO9B variant protein MYO9B protein Unconventional myosin-IXb (Unconventional myosin-9b) Myosin IXB |
Synonyms | MYR5 protein variant |
Description | FUNCTION: Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions . Also acts as a GTPase activator for RHOA . Plays a role in the regulation of cell migration via its role as RHOA GTPase activator. This is regulated by its interaction with the SLIT2 receptor ROBO1; interaction with ROBO1 impairs interaction with RHOA and subsequent activation of RHOA GTPase activity, and thereby leads to increased levels of active, GTP-bound RHOA . . |
Accessions | M0QZY4 ENST00000595618.5 [Q13459-2] ENST00000597073.5 M0R240 ENST00000596942.5 Q4LE74 ENST00000602177.1 M0R0P8 ENST00000682292.1 [Q13459-1] M0R2J3 ENST00000594971.5 M0R300 ENST00000598419.1 Q8WVD2 M0QXP0 ENST00000594824.5 M0QXX1 ENST00000397274.6 [Q13459-2] ENST00000602158.1 ENST00000595641.5 M0R332 Q13459 |