Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 56% ± 19% | |
astrocyte | 13 studies | 34% ± 14% | |
microglial cell | 11 studies | 40% ± 14% | |
endothelial cell | 9 studies | 29% ± 14% | |
glutamatergic neuron | 9 studies | 39% ± 25% | |
macrophage | 9 studies | 39% ± 17% | |
oligodendrocyte precursor cell | 8 studies | 28% ± 10% | |
GABAergic neuron | 7 studies | 43% ± 19% | |
interneuron | 6 studies | 40% ± 19% | |
endothelial cell of lymphatic vessel | 6 studies | 35% ± 13% | |
type I pneumocyte | 6 studies | 33% ± 10% | |
neuron | 5 studies | 39% ± 16% | |
dendritic cell | 5 studies | 20% ± 2% | |
T cell | 5 studies | 19% ± 2% | |
GABAergic interneuron | 3 studies | 27% ± 14% | |
epithelial cell | 3 studies | 26% ± 15% | |
glial cell | 3 studies | 32% ± 3% | |
granule cell | 3 studies | 35% ± 18% | |
CD8-positive, alpha-beta T cell | 3 studies | 20% ± 2% | |
myeloid cell | 3 studies | 31% ± 10% | |
ependymal cell | 3 studies | 36% ± 16% | |
ciliated cell | 3 studies | 29% ± 10% | |
club cell | 3 studies | 25% ± 9% | |
type II pneumocyte | 3 studies | 25% ± 5% | |
leukocyte | 3 studies | 41% ± 15% | |
mast cell | 3 studies | 16% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 15 studies | 41% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5690.58 | 2642 / 2642 | 100% | 45.26 | 704 / 705 |
prostate | 100% | 1876.00 | 244 / 245 | 99% | 8.86 | 496 / 502 |
thymus | 100% | 1646.86 | 651 / 653 | 99% | 13.95 | 596 / 605 |
breast | 100% | 1275.24 | 457 / 459 | 94% | 8.49 | 1056 / 1118 |
intestine | 100% | 1809.57 | 966 / 966 | 92% | 8.98 | 487 / 527 |
adrenal gland | 98% | 1132.69 | 254 / 258 | 91% | 12.58 | 210 / 230 |
stomach | 99% | 1272.79 | 355 / 359 | 90% | 8.39 | 257 / 286 |
lung | 99% | 2258.13 | 573 / 578 | 88% | 8.74 | 1013 / 1155 |
bladder | 100% | 1998.48 | 21 / 21 | 81% | 6.92 | 409 / 504 |
kidney | 92% | 880.39 | 82 / 89 | 84% | 6.13 | 758 / 901 |
ovary | 100% | 1560.60 | 180 / 180 | 75% | 5.31 | 323 / 430 |
esophagus | 95% | 1432.79 | 1369 / 1445 | 80% | 6.63 | 146 / 183 |
skin | 85% | 930.31 | 1534 / 1809 | 89% | 13.02 | 422 / 472 |
uterus | 100% | 1755.99 | 170 / 170 | 71% | 6.04 | 325 / 459 |
liver | 77% | 606.98 | 174 / 226 | 77% | 4.85 | 311 / 406 |
pancreas | 43% | 258.49 | 142 / 328 | 72% | 5.35 | 129 / 178 |
eye | 0% | 0 | 0 / 0 | 100% | 12.68 | 80 / 80 |
spleen | 100% | 2931.44 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.55 | 1 / 1 |
muscle | 100% | 2141.45 | 800 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1277.00 | 1320 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 1328.91 | 1183 / 1204 | 0% | 0 | 0 / 0 |
heart | 89% | 819.19 | 764 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 72% | 6.67 | 21 / 29 |
tonsil | 0% | 0 | 0 / 0 | 69% | 5.13 | 31 / 45 |
peripheral blood | 41% | 294.77 | 377 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0043162 | Biological process | ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway |
GO_0042058 | Biological process | regulation of epidermal growth factor receptor signaling pathway |
GO_0046755 | Biological process | viral budding |
GO_0019075 | Biological process | virus maturation |
GO_0010008 | Cellular component | endosome membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005829 | Cellular component | cytosol |
GO_0000813 | Cellular component | ESCRT I complex |
GO_0031982 | Cellular component | vesicle |
GO_0005769 | Cellular component | early endosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0005770 | Cellular component | late endosome |
GO_0005634 | Cellular component | nucleus |
GO_0043130 | Molecular function | ubiquitin binding |
GO_0005515 | Molecular function | protein binding |
GO_0008289 | Molecular function | lipid binding |
Gene name | MVB12B |
Protein name | Multivesicular body subunit 12B Multivesicular body subunit 12B (ESCRT-I complex subunit MVB12B) (Protein FAM125B) |
Synonyms | FAM125B C9orf28 |
Description | FUNCTION: Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies. |
Accessions | ENST00000361171.8 [Q9H7P6-1] Q9H7P6 ENST00000402437.2 ENST00000489637.3 [Q9H7P6-2] F8W922 |