Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 9 studies | 20% ± 7% | |
endothelial cell | 8 studies | 21% ± 5% | |
natural killer cell | 7 studies | 19% ± 3% | |
CD4-positive, alpha-beta T cell | 5 studies | 21% ± 4% | |
epithelial cell | 5 studies | 37% ± 21% | |
naive B cell | 4 studies | 18% ± 2% | |
B cell | 4 studies | 20% ± 3% | |
basal cell | 4 studies | 21% ± 6% | |
glutamatergic neuron | 4 studies | 28% ± 9% | |
naive thymus-derived CD4-positive, alpha-beta T cell | 3 studies | 21% ± 2% | |
effector memory CD8-positive, alpha-beta T cell | 3 studies | 22% ± 4% | |
hematopoietic precursor cell | 3 studies | 22% ± 9% | |
mature NK T cell | 3 studies | 18% ± 0% | |
pericyte | 3 studies | 18% ± 1% | |
abnormal cell | 3 studies | 21% ± 5% | |
gamma-delta T cell | 3 studies | 29% ± 14% | |
regulatory T cell | 3 studies | 18% ± 2% | |
GABAergic neuron | 3 studies | 25% ± 4% | |
CD8-positive, alpha-beta T cell | 3 studies | 20% ± 3% | |
dendritic cell | 3 studies | 32% ± 9% | |
connective tissue cell | 3 studies | 19% ± 3% | |
neuron | 3 studies | 24% ± 7% | |
oligodendrocyte | 3 studies | 16% ± 1% | |
erythroblast | 3 studies | 25% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2249.96 | 459 / 459 | 100% | 43.16 | 1118 / 1118 |
esophagus | 100% | 2147.65 | 1445 / 1445 | 100% | 29.38 | 183 / 183 |
prostate | 100% | 2071.55 | 245 / 245 | 100% | 41.53 | 502 / 502 |
uterus | 100% | 2246.21 | 170 / 170 | 100% | 40.30 | 458 / 459 |
brain | 100% | 1577.17 | 2636 / 2642 | 100% | 28.44 | 705 / 705 |
ovary | 100% | 2274.13 | 180 / 180 | 100% | 22.24 | 429 / 430 |
adrenal gland | 100% | 1754.24 | 258 / 258 | 100% | 27.87 | 229 / 230 |
thymus | 100% | 2111.29 | 653 / 653 | 100% | 30.14 | 602 / 605 |
lung | 99% | 1628.04 | 575 / 578 | 100% | 34.34 | 1155 / 1155 |
pancreas | 100% | 1215.64 | 328 / 328 | 99% | 26.62 | 177 / 178 |
liver | 100% | 1327.61 | 226 / 226 | 99% | 20.60 | 403 / 406 |
bladder | 100% | 1999.38 | 21 / 21 | 99% | 37.71 | 500 / 504 |
intestine | 100% | 1930.98 | 966 / 966 | 98% | 28.54 | 517 / 527 |
stomach | 100% | 1537.28 | 359 / 359 | 98% | 26.30 | 280 / 286 |
kidney | 100% | 1251.27 | 89 / 89 | 97% | 19.50 | 871 / 901 |
skin | 100% | 2197.35 | 1809 / 1809 | 93% | 29.21 | 439 / 472 |
adipose | 100% | 2185.84 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1911.82 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 27.66 | 29 / 29 |
muscle | 100% | 2276.49 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1871.34 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 16.02 | 1 / 1 |
heart | 98% | 1284.33 | 845 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 57% | 10.39 | 46 / 80 |
peripheral blood | 56% | 949.70 | 522 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008380 | Biological process | RNA splicing |
GO_0000375 | Biological process | RNA splicing, via transesterification reactions |
GO_0030490 | Biological process | maturation of SSU-rRNA |
GO_0006396 | Biological process | RNA processing |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005732 | Cellular component | sno(s)RNA-containing ribonucleoprotein complex |
GO_0005730 | Cellular component | nucleolus |
GO_0034457 | Cellular component | Mpp10 complex |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | MPHOSPH10 |
Protein name | U3 small nucleolar ribonucleoprotein protein MPP10 (M phase phosphoprotein 10) U3 small nucleolar ribonucleoprotein protein MPP10 M-phase phosphoprotein 10 |
Synonyms | MPP10 |
Description | FUNCTION: Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . FUNCTION: Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing. . |
Accessions | ENST00000468427.2 ENST00000244230.7 A0A8Q3WK70 U3KQ48 A0A8Q3WKH7 ENST00000694907.2 ENST00000695484.2 O00566 A0A8Q3WKB6 ENST00000498451.3 |