Name | Number of supported studies | Average coverage | |
---|---|---|---|
erythrocyte | 7 studies | 45% ± 22% | |
mast cell | 7 studies | 21% ± 5% | |
oligodendrocyte | 6 studies | 29% ± 7% | |
retinal cone cell | 5 studies | 36% ± 15% | |
B cell | 4 studies | 18% ± 0% | |
plasma cell | 4 studies | 20% ± 4% | |
endothelial cell | 4 studies | 21% ± 3% | |
interneuron | 4 studies | 38% ± 22% | |
glutamatergic neuron | 3 studies | 28% ± 10% | |
macrophage | 3 studies | 23% ± 2% | |
epithelial cell | 3 studies | 20% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 28% ± 11% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2407.52 | 245 / 245 | 100% | 24.53 | 502 / 502 |
brain | 100% | 2781.05 | 2641 / 2642 | 100% | 36.67 | 702 / 705 |
thymus | 100% | 2607.25 | 653 / 653 | 99% | 22.02 | 601 / 605 |
breast | 100% | 3119.69 | 459 / 459 | 99% | 29.24 | 1108 / 1118 |
liver | 100% | 1960.70 | 226 / 226 | 99% | 17.17 | 402 / 406 |
esophagus | 100% | 2340.02 | 1445 / 1445 | 99% | 17.32 | 181 / 183 |
kidney | 100% | 2545.83 | 89 / 89 | 98% | 21.68 | 887 / 901 |
pancreas | 100% | 2290.36 | 328 / 328 | 98% | 17.13 | 175 / 178 |
stomach | 100% | 1941.60 | 359 / 359 | 98% | 15.14 | 281 / 286 |
lung | 100% | 2282.07 | 577 / 578 | 98% | 15.81 | 1136 / 1155 |
ovary | 100% | 2949.61 | 180 / 180 | 98% | 14.71 | 422 / 430 |
intestine | 100% | 3440.89 | 966 / 966 | 98% | 14.29 | 516 / 527 |
adrenal gland | 100% | 4335.92 | 258 / 258 | 97% | 23.59 | 223 / 230 |
uterus | 100% | 3038.00 | 170 / 170 | 97% | 12.65 | 444 / 459 |
bladder | 100% | 2518.52 | 21 / 21 | 96% | 12.32 | 483 / 504 |
skin | 100% | 2267.84 | 1808 / 1809 | 96% | 14.34 | 451 / 472 |
adipose | 100% | 2586.73 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.62 | 29 / 29 |
peripheral blood | 100% | 6160.19 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 3803.73 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.06 | 45 / 45 |
blood vessel | 100% | 2562.47 | 1333 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 13.28 | 79 / 80 |
muscle | 98% | 1330.21 | 784 / 803 | 0% | 0 | 0 / 0 |
heart | 96% | 1847.70 | 825 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006955 | Biological process | immune response |
GO_0002250 | Biological process | adaptive immune response |
GO_0002495 | Biological process | antigen processing and presentation of peptide antigen via MHC class II |
GO_0000209 | Biological process | protein polyubiquitination |
GO_0031901 | Cellular component | early endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005764 | Cellular component | lysosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005768 | Cellular component | endosome |
GO_0031902 | Cellular component | late endosome membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0042287 | Molecular function | MHC protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | MARCHF8 |
Protein name | E3 ubiquitin-protein ligase MARCHF8 E3 ubiquitin-protein ligase MARCHF8 (EC 2.3.2.27) (Cellular modulator of immune recognition) (c-MIR) (Membrane-associated RING finger protein 8) (Membrane-associated RING-CH protein VIII) (MARCH-VIII) (RING finger protein 178) (RING-type E3 ubiquitin transferase MARCHF8) Membrane associated ring-CH-type finger 8 |
Synonyms | RNF178 MARCH8 MIR |
Description | FUNCTION: E3 ubiquitin-protein ligase that plays several important roles in innate immunity and adaptive immunity . Mediates ubiquitination of CD86 and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies . Possesses a very broad antiviral activity by specifically inactivating different viral fusion proteins . Targets and ubiquitinates cytoplasmic lysine residues of viral envelope glycoproteins with single transmembrane domains leading to their lysosomal degradation . Therefore, shows broad-spectrum inhibition against many viruses including retroviruses, rhabdoviruses, arenaviruses, sarbecoviruses or influenzaviruses . Strongly blocks human immunodeficiency virus type 1 envelope glycoprotein incorporation into virions by down-regulating its cell surface expression. Blocks also ebola virus glycoprotein/GP incorporation via surface down-regulation . Mediates 'Lys-63'-linked polyubiquitination of influenza M2 to target it to lysosome for degradation . Mediates the regulation of constitutive ubiquitination and trafficking of the viral restriction factor BST2 within the endocytic pathway . Plays a role in maintenance of immune tolerance to self by promoting the turnover and proteasomal degradation of PD-L1/CD274 via ubiquitination . Catalyzes the 'Lys-63'-linked polyubiquitylation of cGAS thereby inhibiting its DNA binding ability and impairing its antiviral innate immunity . .; FUNCTION: (Microbial infection) Mediates 'Lys-63'-linked polyubiquitination of hepatitis C virus/HCV protein NS2 which allows its binding to HGS, an ESCRT-0 complex component, and this interaction is essential for HCV envelopment. . |
Accessions | ENST00000612386.1 ENST00000453980.3 ENST00000319836.7 [Q5T0T0-1] A0A0G2JNS9 Q5T0T0 ENST00000395769.6 [Q5T0T0-1] A0A0A0MSM7 ENST00000453424.7 [Q5T0T0-2] ENST00000395771.7 |