Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 27% ± 13% | |
fibroblast | 11 studies | 23% ± 11% | |
astrocyte | 11 studies | 27% ± 13% | |
macrophage | 10 studies | 26% ± 10% | |
adipocyte | 9 studies | 35% ± 12% | |
epithelial cell | 8 studies | 33% ± 15% | |
microglial cell | 6 studies | 26% ± 8% | |
smooth muscle cell | 6 studies | 17% ± 3% | |
type I pneumocyte | 6 studies | 21% ± 6% | |
type II pneumocyte | 6 studies | 24% ± 6% | |
ciliated cell | 5 studies | 26% ± 10% | |
pericyte | 5 studies | 22% ± 9% | |
hepatocyte | 5 studies | 53% ± 23% | |
GABAergic neuron | 5 studies | 40% ± 21% | |
oligodendrocyte | 5 studies | 26% ± 6% | |
myeloid cell | 4 studies | 23% ± 5% | |
retinal cone cell | 4 studies | 28% ± 4% | |
retinal pigment epithelial cell | 4 studies | 34% ± 23% | |
cardiac muscle cell | 4 studies | 28% ± 4% | |
lymphocyte | 4 studies | 20% ± 3% | |
basal cell | 4 studies | 28% ± 14% | |
glutamatergic neuron | 4 studies | 53% ± 21% | |
oligodendrocyte precursor cell | 4 studies | 29% ± 11% | |
club cell | 4 studies | 19% ± 3% | |
endothelial cell of lymphatic vessel | 4 studies | 22% ± 8% | |
interneuron | 4 studies | 40% ± 23% | |
plasma cell | 3 studies | 27% ± 11% | |
rod bipolar cell | 3 studies | 26% ± 4% | |
alveolar macrophage | 3 studies | 28% ± 7% | |
muscle cell | 3 studies | 31% ± 17% | |
transit amplifying cell | 3 studies | 30% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2708.49 | 1445 / 1445 | 100% | 31.65 | 183 / 183 |
liver | 100% | 4345.91 | 226 / 226 | 100% | 24.26 | 406 / 406 |
lung | 100% | 3190.56 | 578 / 578 | 100% | 27.16 | 1154 / 1155 |
breast | 100% | 2804.65 | 459 / 459 | 100% | 34.91 | 1117 / 1118 |
uterus | 100% | 2537.39 | 170 / 170 | 100% | 23.06 | 458 / 459 |
prostate | 100% | 2984.22 | 245 / 245 | 100% | 23.29 | 500 / 502 |
ovary | 100% | 2258.66 | 180 / 180 | 99% | 14.80 | 426 / 430 |
pancreas | 100% | 2164.26 | 328 / 328 | 99% | 18.92 | 176 / 178 |
thymus | 100% | 3057.47 | 653 / 653 | 99% | 18.01 | 598 / 605 |
bladder | 100% | 2845.05 | 21 / 21 | 99% | 22.24 | 498 / 504 |
kidney | 100% | 2757.57 | 89 / 89 | 99% | 20.44 | 890 / 901 |
brain | 99% | 1552.78 | 2607 / 2642 | 100% | 17.79 | 703 / 705 |
stomach | 100% | 2391.33 | 359 / 359 | 98% | 24.78 | 281 / 286 |
intestine | 100% | 2501.80 | 966 / 966 | 98% | 23.69 | 514 / 527 |
adrenal gland | 100% | 4673.59 | 258 / 258 | 97% | 19.29 | 222 / 230 |
skin | 100% | 2990.11 | 1809 / 1809 | 95% | 25.95 | 447 / 472 |
adipose | 100% | 3222.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2539.66 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 21.44 | 29 / 29 |
muscle | 100% | 4171.23 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2317.24 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 24.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.10 | 1 / 1 |
heart | 97% | 2215.62 | 835 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 74% | 10.65 | 59 / 80 |
peripheral blood | 28% | 1011.07 | 264 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0022604 | Biological process | regulation of cell morphogenesis |
GO_0006412 | Biological process | translation |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0010608 | Biological process | post-transcriptional regulation of gene expression |
GO_0045727 | Biological process | positive regulation of translation |
GO_0005829 | Cellular component | cytosol |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0016020 | Cellular component | membrane |
GO_0008143 | Molecular function | poly(A) binding |
GO_0003730 | Molecular function | mRNA 3'-UTR binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | LARP4 |
Protein name | LARP4 protein La-related protein 4 (La ribonucleoprotein domain family member 4) C-Mpl binding protein (La ribonucleoprotein 4) La ribonucleoprotein 4 |
Synonyms | PP13296 |
Description | FUNCTION: RNA binding protein that binds to the poly-A tract of mRNA molecules . Associates with the 40S ribosomal subunit and with polysomes . Plays a role in the regulation of mRNA translation . Plays a role in the regulation of cell morphology and cytoskeletal organization . . |
Accessions | ENST00000398473.7 [Q71RC2-1] E5RHZ8 ENST00000518444.5 [Q71RC2-3] ENST00000548993.5 Q8TBL5 ENST00000522085.5 [Q71RC2-7] ENST00000548174.5 Q71RC2 ENST00000548697.5 ENST00000552445.1 ENST00000429001.7 [Q71RC2-4] F8VSA9 ENST00000347328.9 [Q71RC2-5] F8VY40 F8W1I4 ENST00000550522.5 Q96J85 Q6P4E2 ENST00000523389.5 ENST00000293618.12 [Q71RC2-6] ENST00000520064.2 ENST00000518561.5 F8VXL0 F8VZ60 ENST00000551886.5 F8W1Z5 E5RJH8 ENST00000550260.1 F8VNV1 ENST00000517559.5 Q8WVX5 X6RLN4 |