Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| glutamatergic neuron | 10 studies | 51% ± 25% | |
| endothelial cell | 9 studies | 29% ± 10% | |
| adipocyte | 9 studies | 22% ± 6% | |
| oligodendrocyte precursor cell | 8 studies | 28% ± 10% | |
| GABAergic neuron | 7 studies | 51% ± 25% | |
| plasma cell | 7 studies | 31% ± 10% | |
| epithelial cell | 7 studies | 33% ± 16% | |
| astrocyte | 7 studies | 35% ± 15% | |
| hepatocyte | 6 studies | 49% ± 24% | |
| neuron | 6 studies | 31% ± 14% | |
| interneuron | 6 studies | 45% ± 28% | |
| fibroblast | 6 studies | 21% ± 3% | |
| type II pneumocyte | 6 studies | 21% ± 4% | |
| oligodendrocyte | 6 studies | 27% ± 11% | |
| retinal cone cell | 5 studies | 19% ± 3% | |
| ciliated cell | 5 studies | 25% ± 8% | |
| type I pneumocyte | 5 studies | 23% ± 5% | |
| goblet cell | 5 studies | 31% ± 8% | |
| club cell | 5 studies | 20% ± 6% | |
| cardiac muscle cell | 4 studies | 24% ± 2% | |
| retinal rod cell | 4 studies | 23% ± 4% | |
| pericyte | 4 studies | 17% ± 2% | |
| smooth muscle cell | 4 studies | 19% ± 2% | |
| GABAergic interneuron | 3 studies | 32% ± 1% | |
| macrophage | 3 studies | 22% ± 4% | |
| microglial cell | 3 studies | 21% ± 4% | |
| amacrine cell | 3 studies | 19% ± 3% | |
| basal cell | 3 studies | 26% ± 9% | |
| transit amplifying cell | 3 studies | 31% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1362.30 | 1445 / 1445 | 100% | 10.02 | 183 / 183 |
| prostate | 100% | 1536.78 | 245 / 245 | 100% | 11.82 | 501 / 502 |
| breast | 100% | 1442.00 | 459 / 459 | 100% | 10.89 | 1113 / 1118 |
| lung | 100% | 1452.41 | 576 / 578 | 100% | 8.55 | 1153 / 1155 |
| pancreas | 100% | 3169.56 | 328 / 328 | 99% | 8.27 | 177 / 178 |
| stomach | 100% | 1552.52 | 359 / 359 | 99% | 10.11 | 282 / 286 |
| intestine | 100% | 1575.05 | 966 / 966 | 98% | 10.24 | 519 / 527 |
| kidney | 100% | 1290.35 | 89 / 89 | 98% | 7.76 | 887 / 901 |
| ovary | 100% | 1444.00 | 180 / 180 | 98% | 6.65 | 423 / 430 |
| brain | 99% | 1056.58 | 2617 / 2642 | 99% | 5.59 | 700 / 705 |
| uterus | 100% | 1446.04 | 170 / 170 | 98% | 7.51 | 451 / 459 |
| bladder | 100% | 1509.14 | 21 / 21 | 98% | 8.38 | 494 / 504 |
| liver | 100% | 3237.92 | 226 / 226 | 98% | 7.76 | 397 / 406 |
| thymus | 100% | 1527.90 | 653 / 653 | 98% | 7.17 | 590 / 605 |
| skin | 100% | 1365.62 | 1808 / 1809 | 90% | 5.19 | 426 / 472 |
| adrenal gland | 100% | 1027.90 | 258 / 258 | 90% | 5.42 | 207 / 230 |
| adipose | 100% | 1490.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1701.76 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 100% | 1447.52 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 893.46 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 6.93 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 6.98 | 1 / 1 |
| heart | 96% | 979.17 | 827 / 861 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 79% | 3.52 | 23 / 29 |
| eye | 0% | 0 | 0 / 0 | 49% | 1.77 | 39 / 80 |
| peripheral blood | 34% | 501.85 | 312 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0048255 | Biological process | mRNA stabilization |
| GO_0045727 | Biological process | positive regulation of translation |
| GO_0005829 | Cellular component | cytosol |
| GO_0010494 | Cellular component | cytoplasmic stress granule |
| GO_0005634 | Cellular component | nucleus |
| GO_0000339 | Molecular function | RNA cap binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | LARP1B |
| Protein name | La ribonucleoprotein 1B (La ribonucleoprotein domain family, member 2, isoform CRA_d) La-related protein 1B (La ribonucleoprotein domain family member 1B) (La ribonucleoprotein domain family member 2) (La-related protein 2) La ribonucleoprotein 1B |
| Synonyms | hCG_2026454 LARP2 |
| Description | |
| Accessions | G3V0E9 A0A994J4X5 A0A994J4H9 A0A3B3ISF0 ENST00000650359.2 ENST00000649983.2 ENST00000394288.7 [Q659C4-3] Q659C4 ENST00000508819.5 ENST00000512292.5 ENST00000648358.2 [Q659C4-3] ENST00000507377.1 ENST00000704292.1 H0Y9B4 ENST00000649983.2 [Q659C4-1] ENST00000432347.6 ENST00000507259.5 H0Y9K3 ENST00000326639.11 [Q659C4-1] ENST00000648358.2 D6R9W6 D6RJB0 ENST00000704293.1 A0A3B3IT29 |