Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 51% ± 25% | |
endothelial cell | 9 studies | 29% ± 10% | |
adipocyte | 9 studies | 22% ± 6% | |
oligodendrocyte precursor cell | 8 studies | 28% ± 10% | |
GABAergic neuron | 7 studies | 51% ± 25% | |
plasma cell | 7 studies | 31% ± 10% | |
epithelial cell | 7 studies | 33% ± 16% | |
astrocyte | 7 studies | 35% ± 15% | |
hepatocyte | 6 studies | 49% ± 24% | |
neuron | 6 studies | 31% ± 14% | |
interneuron | 6 studies | 45% ± 28% | |
fibroblast | 6 studies | 21% ± 3% | |
type II pneumocyte | 6 studies | 21% ± 4% | |
oligodendrocyte | 6 studies | 27% ± 11% | |
retinal cone cell | 5 studies | 19% ± 3% | |
ciliated cell | 5 studies | 25% ± 8% | |
type I pneumocyte | 5 studies | 23% ± 5% | |
goblet cell | 5 studies | 31% ± 8% | |
club cell | 5 studies | 20% ± 6% | |
cardiac muscle cell | 4 studies | 24% ± 2% | |
retinal rod cell | 4 studies | 23% ± 4% | |
pericyte | 4 studies | 17% ± 2% | |
smooth muscle cell | 4 studies | 19% ± 2% | |
GABAergic interneuron | 3 studies | 32% ± 1% | |
macrophage | 3 studies | 22% ± 4% | |
microglial cell | 3 studies | 21% ± 4% | |
amacrine cell | 3 studies | 19% ± 3% | |
basal cell | 3 studies | 26% ± 9% | |
transit amplifying cell | 3 studies | 31% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1362.30 | 1445 / 1445 | 100% | 10.02 | 183 / 183 |
prostate | 100% | 1536.78 | 245 / 245 | 100% | 11.82 | 501 / 502 |
breast | 100% | 1442.00 | 459 / 459 | 100% | 10.89 | 1113 / 1118 |
lung | 100% | 1452.41 | 576 / 578 | 100% | 8.55 | 1153 / 1155 |
pancreas | 100% | 3169.56 | 328 / 328 | 99% | 8.27 | 177 / 178 |
stomach | 100% | 1552.52 | 359 / 359 | 99% | 10.11 | 282 / 286 |
intestine | 100% | 1575.05 | 966 / 966 | 98% | 10.24 | 519 / 527 |
kidney | 100% | 1290.35 | 89 / 89 | 98% | 7.76 | 887 / 901 |
ovary | 100% | 1444.00 | 180 / 180 | 98% | 6.65 | 423 / 430 |
brain | 99% | 1056.58 | 2617 / 2642 | 99% | 5.59 | 700 / 705 |
uterus | 100% | 1446.04 | 170 / 170 | 98% | 7.51 | 451 / 459 |
bladder | 100% | 1509.14 | 21 / 21 | 98% | 8.38 | 494 / 504 |
liver | 100% | 3237.92 | 226 / 226 | 98% | 7.76 | 397 / 406 |
thymus | 100% | 1527.90 | 653 / 653 | 98% | 7.17 | 590 / 605 |
skin | 100% | 1365.62 | 1808 / 1809 | 90% | 5.19 | 426 / 472 |
adrenal gland | 100% | 1027.90 | 258 / 258 | 90% | 5.42 | 207 / 230 |
adipose | 100% | 1490.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1701.76 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1447.52 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 893.46 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 6.93 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.98 | 1 / 1 |
heart | 96% | 979.17 | 827 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 3.52 | 23 / 29 |
eye | 0% | 0 | 0 / 0 | 49% | 1.77 | 39 / 80 |
peripheral blood | 34% | 501.85 | 312 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048255 | Biological process | mRNA stabilization |
GO_0045727 | Biological process | positive regulation of translation |
GO_0005829 | Cellular component | cytosol |
GO_0010494 | Cellular component | cytoplasmic stress granule |
GO_0005634 | Cellular component | nucleus |
GO_0000339 | Molecular function | RNA cap binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | LARP1B |
Protein name | La ribonucleoprotein 1B (La ribonucleoprotein domain family, member 2, isoform CRA_d) La-related protein 1B (La ribonucleoprotein domain family member 1B) (La ribonucleoprotein domain family member 2) (La-related protein 2) La ribonucleoprotein 1B |
Synonyms | hCG_2026454 LARP2 |
Description | |
Accessions | G3V0E9 A0A994J4X5 A0A994J4H9 A0A3B3ISF0 ENST00000650359.2 ENST00000649983.2 ENST00000394288.7 [Q659C4-3] Q659C4 ENST00000508819.5 ENST00000512292.5 ENST00000648358.2 [Q659C4-3] ENST00000507377.1 ENST00000704292.1 H0Y9B4 ENST00000649983.2 [Q659C4-1] ENST00000432347.6 ENST00000507259.5 H0Y9K3 ENST00000326639.11 [Q659C4-1] ENST00000648358.2 D6R9W6 D6RJB0 ENST00000704293.1 A0A3B3IT29 |