Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 23% ± 6% | |
epithelial cell | 6 studies | 36% ± 18% | |
abnormal cell | 4 studies | 21% ± 2% | |
myeloid cell | 4 studies | 32% ± 13% | |
macrophage | 4 studies | 21% ± 10% | |
fibroblast | 4 studies | 18% ± 2% | |
goblet cell | 4 studies | 22% ± 5% | |
conventional dendritic cell | 3 studies | 42% ± 20% | |
hematopoietic precursor cell | 3 studies | 41% ± 17% | |
B cell | 3 studies | 19% ± 1% | |
glutamatergic neuron | 3 studies | 30% ± 10% | |
dendritic cell | 3 studies | 36% ± 13% | |
natural killer cell | 3 studies | 16% ± 0% | |
enteroendocrine cell | 3 studies | 20% ± 4% | |
intestinal crypt stem cell | 3 studies | 20% ± 3% | |
basal cell | 3 studies | 24% ± 6% | |
transit amplifying cell | 3 studies | 29% ± 4% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 44% ± 25% | |
erythroblast | 3 studies | 48% ± 26% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 8227.76 | 21 / 21 | 100% | 151.52 | 504 / 504 |
esophagus | 100% | 7761.37 | 1445 / 1445 | 100% | 183.37 | 183 / 183 |
intestine | 100% | 7983.73 | 966 / 966 | 100% | 169.34 | 527 / 527 |
stomach | 100% | 5771.66 | 359 / 359 | 100% | 168.69 | 286 / 286 |
uterus | 100% | 10605.16 | 170 / 170 | 100% | 169.01 | 459 / 459 |
prostate | 100% | 7053.22 | 245 / 245 | 100% | 121.28 | 501 / 502 |
skin | 100% | 9600.98 | 1809 / 1809 | 100% | 226.04 | 471 / 472 |
ovary | 100% | 10261.33 | 180 / 180 | 100% | 169.92 | 429 / 430 |
brain | 100% | 6325.14 | 2638 / 2642 | 100% | 187.75 | 704 / 705 |
thymus | 100% | 7980.95 | 653 / 653 | 100% | 114.56 | 603 / 605 |
breast | 100% | 6939.23 | 459 / 459 | 99% | 130.69 | 1112 / 1118 |
pancreas | 100% | 4380.70 | 327 / 328 | 99% | 95.37 | 177 / 178 |
adrenal gland | 100% | 7600.17 | 258 / 258 | 99% | 109.60 | 228 / 230 |
lung | 100% | 6693.72 | 577 / 578 | 99% | 141.08 | 1145 / 1155 |
kidney | 100% | 5150.99 | 89 / 89 | 99% | 86.60 | 889 / 901 |
liver | 100% | 4038.45 | 226 / 226 | 97% | 80.00 | 394 / 406 |
adipose | 100% | 6733.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5789.18 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 208.17 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 159.22 | 29 / 29 |
muscle | 100% | 5503.49 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 7032.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 182.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 90.23 | 1 / 1 |
heart | 98% | 3722.73 | 843 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 5840.06 | 850 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006397 | Biological process | mRNA processing |
GO_0043488 | Biological process | regulation of mRNA stability |
GO_0051028 | Biological process | mRNA transport |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0010989 | Biological process | negative regulation of low-density lipoprotein particle clearance |
GO_0045019 | Biological process | negative regulation of nitric oxide biosynthetic process |
GO_0061158 | Biological process | 3'-UTR-mediated mRNA destabilization |
GO_0006457 | Biological process | protein folding |
GO_0071345 | Biological process | cellular response to cytokine stimulus |
GO_0008380 | Biological process | RNA splicing |
GO_0000375 | Biological process | RNA splicing, via transesterification reactions |
GO_0061014 | Biological process | positive regulation of mRNA catabolic process |
GO_0010586 | Biological process | miRNA metabolic process |
GO_0000178 | Cellular component | exosome (RNase complex) |
GO_0016020 | Cellular component | membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0044183 | Molecular function | protein folding chaperone |
GO_0003729 | Molecular function | mRNA binding |
GO_0035925 | Molecular function | mRNA 3'-UTR AU-rich region binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | KHSRP |
Protein name | Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH type-splicing regulatory protein) (KSRP) (p75) KH-type splicing regulatory protein |
Synonyms | FUBP2 hCG_23049 |
Description | FUNCTION: Binds to the dendritic targeting element and may play a role in mRNA trafficking (By similarity). Part of a ternary complex that binds to the downstream control sequence (DCS) of the pre-mRNA. Mediates exon inclusion in transcripts that are subject to tissue-specific alternative splicing. May interact with single-stranded DNA from the far-upstream element (FUSE). May activate gene expression. Also involved in degradation of inherently unstable mRNAs that contain AU-rich elements (AREs) in their 3'-UTR, possibly by recruiting degradation machinery to ARE-containing mRNAs. . |
Accessions | ENST00000600480.2 ENST00000595258.1 M0R0C6 Q92945 M0QYG1 ENST00000594745.5 M0QYH3 ENST00000595548.5 M0R0I5 ENST00000597656.5 M0R3J3 ENST00000398148.7 M0QXW7 M0R251 ENST00000599395.5 M0R263 ENST00000594496.5 ENST00000595223.5 |