ICA1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	23 studies	27% ± 10%	Explore
regulatory T cell	12 studies	23% ± 6%	Explore
glutamatergic neuron	10 studies	48% ± 25%	Explore
neuron	7 studies	38% ± 15%	Explore
oligodendrocyte precursor cell	7 studies	25% ± 7%	Explore
type I pneumocyte	6 studies	20% ± 6%	Explore
ciliated cell	6 studies	25% ± 7%	Explore
endothelial cell of lymphatic vessel	6 studies	34% ± 9%	Explore
type II pneumocyte	6 studies	23% ± 6%	Explore
GABAergic neuron	6 studies	55% ± 23%	Explore
macrophage	6 studies	26% ± 8%	Explore
T follicular helper cell	5 studies	37% ± 13%	Explore
epithelial cell	5 studies	35% ± 19%	Explore
mucus secreting cell	5 studies	30% ± 4%	Explore
cardiac muscle cell	5 studies	35% ± 6%	Explore
endothelial cell of vascular tree	5 studies	27% ± 15%	Explore
goblet cell	5 studies	44% ± 17%	Explore
club cell	5 studies	23% ± 8%	Explore
interneuron	5 studies	46% ± 25%	Explore
microglial cell	4 studies	22% ± 3%	Explore
retinal ganglion cell	4 studies	21% ± 3%	Explore
respiratory goblet cell	4 studies	36% ± 8%	Explore
pancreatic A cell	3 studies	29% ± 5%	Explore
type B pancreatic cell	3 studies	38% ± 2%	Explore
GABAergic interneuron	3 studies	30% ± 5%	Explore
vein endothelial cell	3 studies	36% ± 21%	Explore
enteroendocrine cell	3 studies	35% ± 13%	Explore
granule cell	3 studies	30% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	41% ± 18%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	8 studies	38% ± 26%	Explore
pancreas	3 studies	31% ± 2%	Explore
heart	3 studies	19% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
pancreas	100%	3659.94	328 / 328	98%	31.98	175 / 178
breast	100%	2319.90	459 / 459	98%	39.17	1097 / 1118
prostate	97%	1871.44	237 / 245	100%	50.20	502 / 502
stomach	98%	1830.52	353 / 359	96%	32.05	275 / 286
thymus	100%	1111.05	652 / 653	91%	11.86	553 / 605
bladder	90%	1060.57	19 / 21	88%	28.37	445 / 504
intestine	80%	969.41	775 / 966	98%	40.45	517 / 527
lung	99%	1287.80	573 / 578	78%	20.29	903 / 1155
kidney	100%	1626.53	89 / 89	68%	9.65	613 / 901
uterus	94%	583.22	160 / 170	62%	12.57	285 / 459
brain	93%	1707.31	2454 / 2642	59%	6.41	415 / 705
esophagus	83%	561.57	1202 / 1445	58%	16.20	106 / 183
skin	72%	830.12	1300 / 1809	56%	7.80	266 / 472
liver	64%	452.89	145 / 226	49%	8.17	199 / 406
adrenal gland	36%	188.33	94 / 258	66%	29.70	151 / 230
ovary	17%	79.28	30 / 180	83%	12.20	359 / 430
spleen	100%	1454.93	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	26.00	1 / 1
adipose	100%	1765.73	1203 / 1204	0%	0	0 / 0
heart	99%	2071.12	851 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	47%	6.50	21 / 45
eye	0%	0	0 / 0	40%	3.79	32 / 80
blood vessel	39%	223.27	524 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	31%	4.08	9 / 29
peripheral blood	18%	85.32	171 / 929	0%	0	0 / 0
muscle	15%	58.22	121 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0