GGCT report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	10 studies	37% ± 22%	Explore
endothelial cell	7 studies	25% ± 10%	Explore
fibroblast	7 studies	23% ± 9%	Explore
ciliated cell	7 studies	31% ± 16%	Explore
CD8-positive, alpha-beta T cell	7 studies	26% ± 3%	Explore
CD4-positive, alpha-beta T cell	6 studies	24% ± 6%	Explore
progenitor cell	5 studies	23% ± 4%	Explore
transit amplifying cell	5 studies	29% ± 8%	Explore
basal cell	5 studies	31% ± 16%	Explore
hematopoietic precursor cell	4 studies	36% ± 12%	Explore
conventional dendritic cell	4 studies	31% ± 12%	Explore
T cell	4 studies	21% ± 8%	Explore
intestinal crypt stem cell	4 studies	26% ± 7%	Explore
erythroblast	4 studies	31% ± 12%	Explore
type II pneumocyte	4 studies	28% ± 16%	Explore
hematopoietic stem cell	4 studies	20% ± 2%	Explore
natural killer cell	4 studies	27% ± 5%	Explore
regulatory T cell	4 studies	20% ± 4%	Explore
epithelial cell of proximal tubule	3 studies	20% ± 3%	Explore
neural crest cell	3 studies	21% ± 3%	Explore
smooth muscle cell	3 studies	17% ± 2%	Explore
B cell	3 studies	24% ± 7%	Explore
placental villous trophoblast	3 studies	46% ± 26%	Explore
common myeloid progenitor	3 studies	30% ± 12%	Explore
type I pneumocyte	3 studies	27% ± 10%	Explore
retina horizontal cell	3 studies	24% ± 5%	Explore
macrophage	3 studies	27% ± 7%	Explore
glutamatergic neuron	3 studies	39% ± 11%	Explore
dendritic cell	3 studies	42% ± 1%	Explore
abnormal cell	3 studies	36% ± 11%	Explore
goblet cell	3 studies	24% ± 6%	Explore
plasmacytoid dendritic cell	3 studies	24% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	3 studies	24% ± 4%	Explore
luminal hormone-sensing cell of mammary gland	3 studies	24% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	7 studies	22% ± 7%	Explore
brain	4 studies	24% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
uterus	100%	1109.81	170 / 170	100%	83.02	459 / 459
esophagus	100%	1897.13	1444 / 1445	100%	56.08	183 / 183
bladder	100%	1491.57	21 / 21	100%	84.68	502 / 504
thymus	100%	1455.62	653 / 653	100%	79.58	602 / 605
intestine	100%	1453.29	966 / 966	99%	69.73	524 / 527
ovary	100%	1116.38	180 / 180	99%	40.25	427 / 430
breast	100%	2930.84	459 / 459	99%	98.18	1110 / 1118
prostate	100%	1497.84	245 / 245	99%	77.45	498 / 502
lung	99%	1345.87	575 / 578	100%	59.87	1151 / 1155
stomach	100%	1153.37	358 / 359	99%	59.88	284 / 286
skin	100%	2414.74	1809 / 1809	99%	43.10	466 / 472
brain	99%	1383.86	2617 / 2642	99%	30.04	700 / 705
pancreas	99%	870.48	325 / 328	99%	40.46	176 / 178
liver	100%	833.04	225 / 226	95%	28.51	384 / 406
adrenal gland	100%	1748.64	258 / 258	92%	26.19	212 / 230
kidney	100%	1532.79	89 / 89	80%	17.29	720 / 901
lymph node	0%	0	0 / 0	100%	48.98	29 / 29
spleen	100%	1143.08	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	60.41	45 / 45
ureter	0%	0	0 / 0	100%	80.62	1 / 1
adipose	100%	3107.98	1203 / 1204	0%	0	0 / 0
blood vessel	99%	969.37	1328 / 1335	0%	0	0 / 0
muscle	98%	795.72	789 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	98%	35.48	78 / 80
heart	93%	795.49	799 / 861	0%	0	0 / 0
peripheral blood	28%	664.48	262 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0