Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 18 studies | 33% ± 14% | |
astrocyte | 14 studies | 35% ± 16% | |
glutamatergic neuron | 12 studies | 62% ± 25% | |
GABAergic neuron | 11 studies | 50% ± 26% | |
oligodendrocyte precursor cell | 11 studies | 34% ± 12% | |
ciliated cell | 10 studies | 28% ± 13% | |
microglial cell | 10 studies | 31% ± 15% | |
adipocyte | 9 studies | 29% ± 8% | |
fibroblast | 9 studies | 30% ± 12% | |
epithelial cell | 7 studies | 35% ± 22% | |
macrophage | 7 studies | 28% ± 11% | |
neuron | 6 studies | 41% ± 16% | |
interneuron | 6 studies | 59% ± 20% | |
oligodendrocyte | 6 studies | 29% ± 18% | |
smooth muscle cell | 6 studies | 25% ± 7% | |
pericyte | 6 studies | 28% ± 11% | |
cardiac muscle cell | 5 studies | 47% ± 13% | |
endothelial cell of lymphatic vessel | 5 studies | 27% ± 6% | |
type I pneumocyte | 5 studies | 31% ± 10% | |
type II pneumocyte | 5 studies | 26% ± 7% | |
granule cell | 4 studies | 51% ± 15% | |
amacrine cell | 4 studies | 28% ± 9% | |
retinal ganglion cell | 4 studies | 45% ± 25% | |
club cell | 4 studies | 25% ± 7% | |
GABAergic interneuron | 3 studies | 47% ± 5% | |
progenitor cell | 3 studies | 35% ± 3% | |
plasma cell | 3 studies | 23% ± 5% | |
GABAergic amacrine cell | 3 studies | 37% ± 12% | |
Mueller cell | 3 studies | 25% ± 5% | |
OFF-bipolar cell | 3 studies | 20% ± 4% | |
glycinergic amacrine cell | 3 studies | 29% ± 9% | |
ependymal cell | 3 studies | 33% ± 16% | |
T cell | 3 studies | 18% ± 1% | |
monocyte | 3 studies | 18% ± 1% | |
respiratory goblet cell | 3 studies | 32% ± 12% | |
lymphocyte | 3 studies | 25% ± 8% | |
basal cell | 3 studies | 33% ± 19% | |
goblet cell | 3 studies | 37% ± 23% | |
mucus secreting cell | 3 studies | 29% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2682.30 | 245 / 245 | 100% | 21.91 | 502 / 502 |
thymus | 100% | 4518.40 | 653 / 653 | 100% | 22.55 | 605 / 605 |
breast | 100% | 1754.40 | 459 / 459 | 99% | 17.87 | 1109 / 1118 |
uterus | 100% | 2494.71 | 170 / 170 | 98% | 12.76 | 452 / 459 |
intestine | 100% | 2045.21 | 966 / 966 | 98% | 16.79 | 518 / 527 |
stomach | 100% | 1554.42 | 359 / 359 | 98% | 15.58 | 281 / 286 |
pancreas | 99% | 1709.98 | 325 / 328 | 98% | 11.38 | 174 / 178 |
esophagus | 100% | 1745.99 | 1445 / 1445 | 97% | 12.16 | 177 / 183 |
adrenal gland | 100% | 4580.45 | 258 / 258 | 97% | 18.02 | 222 / 230 |
lung | 100% | 2222.04 | 577 / 578 | 96% | 13.73 | 1114 / 1155 |
kidney | 100% | 1764.62 | 89 / 89 | 96% | 11.12 | 867 / 901 |
ovary | 100% | 1762.51 | 180 / 180 | 95% | 9.95 | 407 / 430 |
bladder | 100% | 1831.52 | 21 / 21 | 94% | 13.74 | 475 / 504 |
brain | 98% | 2879.84 | 2578 / 2642 | 97% | 10.10 | 681 / 705 |
skin | 100% | 2200.36 | 1805 / 1809 | 93% | 12.47 | 440 / 472 |
liver | 70% | 537.87 | 159 / 226 | 74% | 4.92 | 301 / 406 |
spleen | 100% | 1451.52 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 13.05 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.74 | 1 / 1 |
adipose | 100% | 1634.12 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 1585.19 | 798 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 1338.70 | 1315 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 9.88 | 28 / 29 |
heart | 96% | 2039.51 | 825 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 11.17 | 75 / 80 |
peripheral blood | 69% | 1587.81 | 645 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060147 | Biological process | regulation of post-transcriptional gene silencing |
GO_0005829 | Cellular component | cytosol |
GO_0005925 | Cellular component | focal adhesion |
GO_0005515 | Molecular function | protein binding |
Gene name | FOCAD |
Protein name | Focadhesin |
Synonyms | KIAA1797 |
Description | FUNCTION: Required for the maintenance of SKIC2 and SKIC3 proteostatic levels in the liver. May be involved in the regulation of RNA degradation by the exosome complex . Potential tumor suppressor in gliomas. . |
Accessions | S4R437 ENST00000603648.2 ENST00000603044.5 S4R3S9 ENST00000604254.5 ENST00000338382.11 ENST00000603695.1 S4R3N8 S4R450 Q5VW36 ENST00000380249.5 |