Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 12 studies | 30% ± 14% | |
astrocyte | 11 studies | 33% ± 15% | |
macrophage | 10 studies | 30% ± 12% | |
fibroblast | 10 studies | 30% ± 13% | |
adipocyte | 9 studies | 33% ± 10% | |
glutamatergic neuron | 7 studies | 41% ± 22% | |
microglial cell | 6 studies | 31% ± 10% | |
oligodendrocyte precursor cell | 6 studies | 35% ± 15% | |
dendritic cell | 6 studies | 19% ± 5% | |
oligodendrocyte | 6 studies | 30% ± 7% | |
neuron | 5 studies | 30% ± 15% | |
interneuron | 5 studies | 46% ± 22% | |
epithelial cell | 5 studies | 37% ± 20% | |
monocyte | 5 studies | 26% ± 6% | |
smooth muscle cell | 5 studies | 24% ± 5% | |
type I pneumocyte | 5 studies | 20% ± 5% | |
GABAergic neuron | 5 studies | 47% ± 20% | |
granule cell | 4 studies | 25% ± 6% | |
cardiac muscle cell | 4 studies | 32% ± 5% | |
Mueller cell | 4 studies | 25% ± 7% | |
amacrine cell | 4 studies | 23% ± 7% | |
retina horizontal cell | 4 studies | 26% ± 9% | |
retinal rod cell | 4 studies | 20% ± 4% | |
myeloid cell | 4 studies | 28% ± 6% | |
endothelial cell of lymphatic vessel | 4 studies | 24% ± 6% | |
type II pneumocyte | 4 studies | 20% ± 5% | |
ciliated cell | 3 studies | 25% ± 4% | |
glycinergic amacrine cell | 3 studies | 23% ± 2% | |
T cell | 3 studies | 16% ± 1% | |
alveolar macrophage | 3 studies | 33% ± 8% | |
club cell | 3 studies | 22% ± 6% | |
pericyte | 3 studies | 28% ± 9% | |
lymphocyte | 3 studies | 26% ± 5% | |
basal cell | 3 studies | 32% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 3110.00 | 21 / 21 | 100% | 11.04 | 504 / 504 |
breast | 100% | 2364.78 | 459 / 459 | 100% | 13.33 | 1118 / 1118 |
esophagus | 100% | 2694.13 | 1445 / 1445 | 100% | 14.21 | 183 / 183 |
ovary | 100% | 2872.35 | 180 / 180 | 100% | 13.93 | 430 / 430 |
prostate | 100% | 3143.72 | 245 / 245 | 100% | 19.86 | 502 / 502 |
skin | 100% | 3916.49 | 1809 / 1809 | 100% | 13.26 | 472 / 472 |
stomach | 100% | 1791.75 | 359 / 359 | 100% | 10.81 | 286 / 286 |
thymus | 100% | 2692.81 | 653 / 653 | 100% | 14.45 | 605 / 605 |
uterus | 100% | 3631.66 | 170 / 170 | 100% | 14.65 | 459 / 459 |
intestine | 100% | 2149.51 | 966 / 966 | 100% | 9.77 | 526 / 527 |
pancreas | 100% | 1251.09 | 327 / 328 | 100% | 11.01 | 178 / 178 |
lung | 100% | 2265.65 | 576 / 578 | 100% | 12.10 | 1155 / 1155 |
kidney | 100% | 1610.96 | 89 / 89 | 99% | 10.05 | 895 / 901 |
liver | 100% | 1082.29 | 226 / 226 | 99% | 5.65 | 403 / 406 |
brain | 98% | 1975.94 | 2599 / 2642 | 100% | 15.38 | 705 / 705 |
adrenal gland | 100% | 2068.40 | 258 / 258 | 98% | 8.87 | 226 / 230 |
adipose | 100% | 2398.91 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4602.37 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 11.32 | 29 / 29 |
spleen | 100% | 2255.74 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.29 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.39 | 1 / 1 |
muscle | 100% | 2538.72 | 802 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 8.35 | 79 / 80 |
heart | 98% | 1839.99 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 1767.50 | 905 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0019005 | Cellular component | SCF ubiquitin ligase complex |
GO_1990756 | Molecular function | ubiquitin-like ligase-substrate adaptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | FBXO42 |
Protein name | F-box protein 42 F-box only protein 42 (Just one F-box and Kelch domain-containing protein) |
Synonyms | FBX42 KIAA1332 JFK |
Description | FUNCTION: Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Specifically recognizes p53/TP53, promoting its ubiquitination and degradation. . |
Accessions | ENST00000375592.8 ENST00000456164.5 ENST00000444116.1 X6RKU3 ENST00000707355.1 Q6P3S6 |